Run ID: ERR4819023
Sample name:
Date: 01-04-2023 15:52:49
Number of reads: 65088
Percentage reads mapped: 66.84
Strain: lineage4
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.88 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406270 | c.1071C>T | synonymous_variant | 1.0 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472579 | n.734G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.6 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472764 | n.919G>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.88 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.86 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473123 | n.1278A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473221 | n.1376C>T | non_coding_transcript_exon_variant | 0.8 |
rrs | 1473252 | n.1407T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.67 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.75 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168186 | p.Phe809Leu | missense_variant | 0.67 |
ahpC | 2726082 | c.-111G>A | upstream_gene_variant | 0.5 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4243960 | p.Arg243Gln | missense_variant | 1.0 |
ethA | 4327085 | p.Thr130Ser | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |