Run ID: ERR4821128
Sample name:
Date: 01-04-2023 17:04:41
Number of reads: 1038869
Percentage reads mapped: 94.47
Strain: lineage4.1.3
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.3 | Euro-American | T;X;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761110 | p.Asp435Val | missense_variant | 1.0 | rifampicin |
fabG1 | 1673432 | c.-8T>A | upstream_gene_variant | 1.0 | isoniazid |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
embA | 4243222 | c.-11C>A | upstream_gene_variant | 0.13 | ethambutol |
embB | 4248003 | p.Gln497Arg | missense_variant | 1.0 | ethambutol |
gid | 4407967 | p.Leu79Ser | missense_variant | 1.0 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5045 | c.-195C>A | upstream_gene_variant | 0.2 |
gyrB | 5069 | c.-171G>T | upstream_gene_variant | 0.14 |
gyrB | 5594 | p.Gly119Arg | missense_variant | 0.18 |
gyrB | 5695 | p.Lys152Asn | missense_variant | 0.13 |
gyrB | 6445 | p.Asp402Glu | missense_variant | 0.14 |
gyrB | 6635 | p.Ser466Pro | missense_variant | 0.11 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7414 | p.Gly38Ala | missense_variant | 0.17 |
gyrA | 7569 | p.Ala90Thr | missense_variant | 0.15 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7652 | c.351C>A | synonymous_variant | 0.25 |
gyrA | 8365 | p.Thr355Met | missense_variant | 0.15 |
gyrA | 8688 | p.Ala463Ser | missense_variant | 0.22 |
gyrA | 8849 | c.1548C>G | synonymous_variant | 0.13 |
gyrA | 8931 | p.Val544Met | missense_variant | 0.13 |
gyrA | 9134 | c.1833C>A | synonymous_variant | 0.17 |
gyrA | 9144 | p.Arg615Cys | missense_variant | 0.2 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9557 | c.2256G>C | synonymous_variant | 1.0 |
gyrA | 9638 | c.2337C>A | synonymous_variant | 0.14 |
gyrA | 9658 | p.Thr786Ile | missense_variant | 0.17 |
fgd1 | 490744 | c.-39T>C | upstream_gene_variant | 0.14 |
fgd1 | 490745 | c.-38G>A | upstream_gene_variant | 0.17 |
fgd1 | 490875 | c.93C>T | synonymous_variant | 0.18 |
fgd1 | 491151 | c.369G>C | synonymous_variant | 0.12 |
fgd1 | 491187 | c.405G>T | synonymous_variant | 0.18 |
fgd1 | 491728 | p.Asp316Asn | missense_variant | 0.17 |
mshA | 575254 | c.-94C>T | upstream_gene_variant | 0.25 |
mshA | 575632 | c.285G>A | synonymous_variant | 0.25 |
mshA | 575661 | p.Pro105His | missense_variant | 0.18 |
mshA | 576013 | p.Arg222Ser | missense_variant | 0.4 |
ccsA | 620124 | c.234G>T | synonymous_variant | 0.18 |
ccsA | 620721 | c.831G>A | synonymous_variant | 0.33 |
ccsA | 620741 | p.Thr284Lys | missense_variant | 0.29 |
rpoB | 759657 | c.-150G>T | upstream_gene_variant | 0.14 |
rpoB | 759715 | c.-91delA | upstream_gene_variant | 0.15 |
rpoB | 759827 | p.Ser7Arg | missense_variant | 0.2 |
rpoB | 760499 | c.693G>A | synonymous_variant | 0.14 |
rpoB | 760626 | p.Lys274Glu | missense_variant | 0.11 |
rpoB | 760670 | c.864G>T | synonymous_variant | 0.12 |
rpoB | 761064 | p.Ala420Thr | missense_variant | 0.25 |
rpoB | 761166 | p.Pro454Thr | missense_variant | 0.2 |
rpoB | 761945 | c.2139G>A | synonymous_variant | 0.14 |
rpoB | 762176 | c.2370T>C | synonymous_variant | 0.13 |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.12 |
rpoB | 762663 | p.Leu953Met | missense_variant | 0.2 |
rpoC | 762989 | c.-381G>T | upstream_gene_variant | 0.18 |
rpoB | 763261 | p.Ala1152Val | missense_variant | 0.14 |
rpoC | 763373 | p.Leu2Ile | missense_variant | 0.29 |
rpoC | 763558 | c.189C>T | synonymous_variant | 0.14 |
rpoC | 763620 | p.Arg84His | missense_variant | 0.18 |
rpoC | 763971 | p.Gly201Val | missense_variant | 0.33 |
rpoC | 763997 | p.Asp210Asn | missense_variant | 0.5 |
rpoC | 764109 | p.Arg247His | missense_variant | 0.13 |
rpoC | 764384 | p.Asp339Tyr | missense_variant | 0.17 |
rpoC | 764395 | p.Asp342Glu | missense_variant | 0.11 |
rpoC | 764671 | c.1302G>A | synonymous_variant | 0.17 |
rpoC | 764781 | p.Ser471Asn | missense_variant | 0.17 |
rpoC | 764873 | p.Pro502Ser | missense_variant | 0.13 |
rpoC | 764979 | p.Asp537Gly | missense_variant | 0.11 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
rpoC | 765282 | p.Thr638Asn | missense_variant | 0.12 |
rpoC | 766105 | c.2736C>A | synonymous_variant | 0.18 |
rpoC | 766229 | p.Ala954Ser | missense_variant | 0.18 |
rpoC | 766278 | p.Thr970Asn | missense_variant | 0.13 |
rpoC | 766625 | p.Leu1086Met | missense_variant | 0.12 |
rpoC | 766696 | c.3327G>A | synonymous_variant | 0.25 |
rpoC | 766780 | p.Glu1137Asp | missense_variant | 0.25 |
rpoC | 766799 | p.Ala1144Ser | missense_variant | 0.14 |
rpoC | 766984 | c.3615G>A | synonymous_variant | 0.18 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775947 | p.Ala845Asp | missense_variant | 0.18 |
mmpL5 | 776103 | p.Ile793Thr | missense_variant | 0.2 |
mmpL5 | 776203 | p.Gly760Cys | missense_variant | 0.2 |
mmpL5 | 776448 | p.Glu678Gly | missense_variant | 0.33 |
mmpL5 | 776758 | p.Asp575Asn | missense_variant | 0.25 |
mmpL5 | 776870 | c.1611G>A | synonymous_variant | 0.17 |
mmpL5 | 777598 | p.Arg295Trp | missense_variant | 0.2 |
mmpL5 | 777611 | c.870G>T | synonymous_variant | 0.17 |
mmpL5 | 777766 | p.Gly239Trp | missense_variant | 0.25 |
mmpL5 | 778585 | c.-105C>A | upstream_gene_variant | 0.4 |
mmpS5 | 778881 | p.Trp9Arg | missense_variant | 0.14 |
mmpR5 | 779048 | p.Val20Asp | missense_variant | 0.25 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781421 | c.-139C>A | upstream_gene_variant | 1.0 |
rplC | 801017 | p.Tyr70Cys | missense_variant | 0.17 |
fbiC | 1302830 | c.-101T>C | upstream_gene_variant | 0.12 |
fbiC | 1304219 | p.Pro430Leu | missense_variant | 0.22 |
fbiC | 1304392 | p.Pro488Ser | missense_variant | 0.17 |
fbiC | 1304610 | c.1680C>T | synonymous_variant | 1.0 |
fbiC | 1305016 | p.Thr696Pro | missense_variant | 0.12 |
fbiC | 1305021 | c.2091C>A | synonymous_variant | 0.14 |
fbiC | 1305132 | c.2202C>T | synonymous_variant | 0.22 |
fbiC | 1305153 | c.2223G>A | synonymous_variant | 0.2 |
fbiC | 1305234 | c.2304G>A | synonymous_variant | 0.2 |
fbiC | 1305395 | p.Ser822Tyr | missense_variant | 0.18 |
Rv1258c | 1406431 | p.Val304Phe | missense_variant | 0.15 |
Rv1258c | 1406532 | p.Gly270Val | missense_variant | 0.12 |
Rv1258c | 1406693 | c.648G>T | synonymous_variant | 0.15 |
Rv1258c | 1406754 | p.Ala196Asp | missense_variant | 0.17 |
embR | 1416310 | c.1038G>A | synonymous_variant | 0.12 |
embR | 1416376 | p.Asn324Lys | missense_variant | 0.31 |
embR | 1416526 | c.822C>G | synonymous_variant | 0.12 |
embR | 1416618 | p.Gly244Ser | missense_variant | 0.17 |
embR | 1416736 | c.612G>T | synonymous_variant | 0.29 |
embR | 1416792 | c.555delG | frameshift_variant | 0.13 |
embR | 1416981 | p.Val123Met | missense_variant | 0.17 |
embR | 1417062 | p.Ala96Thr | missense_variant | 0.18 |
embR | 1417522 | c.-175C>A | upstream_gene_variant | 0.2 |
embR | 1417544 | c.-197T>A | upstream_gene_variant | 0.17 |
atpE | 1461117 | p.Gly25Cys | missense_variant | 0.15 |
atpE | 1461152 | c.108C>A | synonymous_variant | 0.25 |
rrs | 1471657 | n.-189G>A | upstream_gene_variant | 0.18 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471673 | n.-173C>T | upstream_gene_variant | 0.13 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472824 | n.979T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473177 | n.1332G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473192 | n.1347A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473199 | n.1356delA | non_coding_transcript_exon_variant | 1.0 |
rrs | 1473205 | n.1360T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1473483 | n.-175C>A | upstream_gene_variant | 0.33 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1674124 | p.Ala229Ser | missense_variant | 0.5 |
fabG1 | 1674151 | p.Pro238Thr | missense_variant | 0.13 |
inhA | 1674391 | p.Asp64Asn | missense_variant | 0.2 |
inhA | 1674733 | p.Glu178* | stop_gained | 0.14 |
rpsA | 1833413 | c.-129G>A | upstream_gene_variant | 0.2 |
rpsA | 1833480 | c.-62G>T | upstream_gene_variant | 0.17 |
rpsA | 1833743 | c.202C>T | synonymous_variant | 0.15 |
rpsA | 1834395 | p.Arg285Gln | missense_variant | 0.13 |
rpsA | 1834399 | c.858C>T | synonymous_variant | 0.13 |
rpsA | 1834617 | p.Ser359Leu | missense_variant | 0.14 |
rpsA | 1834735 | c.1194C>T | synonymous_variant | 0.2 |
rpsA | 1834953 | p.Ala471Glu | missense_variant | 0.17 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918025 | p.Ala29Val | missense_variant | 0.25 |
tlyA | 1918514 | p.Val192Asp | missense_variant | 0.14 |
ndh | 2101717 | c.1326C>T | synonymous_variant | 0.18 |
ndh | 2101747 | c.1296C>T | synonymous_variant | 0.13 |
ndh | 2102966 | p.Gly26Val | missense_variant | 0.13 |
katG | 2153894 | p.Arg740Ser | missense_variant | 0.17 |
katG | 2154077 | p.Gln679Lys | missense_variant | 0.14 |
katG | 2154161 | p.Glu651* | stop_gained | 0.25 |
katG | 2154324 | p.Asn596Lys | missense_variant | 0.13 |
katG | 2154707 | p.Val469Ile | missense_variant | 0.12 |
katG | 2154785 | p.Pro443Thr | missense_variant | 0.13 |
katG | 2154944 | p.Tyr390Asn | missense_variant | 0.18 |
katG | 2155493 | p.Asp207Asn | missense_variant | 0.17 |
katG | 2155674 | c.438G>T | synonymous_variant | 0.5 |
katG | 2155764 | c.348C>T | synonymous_variant | 0.25 |
katG | 2155797 | p.Met105Ile | missense_variant | 0.25 |
katG | 2155834 | p.Ala93Asp | missense_variant | 0.18 |
katG | 2156062 | p.Ser17Ile | missense_variant | 0.18 |
katG | 2156236 | c.-125C>T | upstream_gene_variant | 0.17 |
katG | 2156347 | c.-236G>A | upstream_gene_variant | 0.2 |
katG | 2156501 | c.-390C>T | upstream_gene_variant | 0.25 |
katG | 2156559 | c.-448C>T | upstream_gene_variant | 0.25 |
PPE35 | 2167876 | p.Gly913Ser | missense_variant | 0.18 |
PPE35 | 2167984 | p.Gly877Cys | missense_variant | 0.18 |
PPE35 | 2168067 | p.Phe849Ser | missense_variant | 0.2 |
PPE35 | 2168638 | p.Pro659Thr | missense_variant | 0.2 |
PPE35 | 2169217 | p.Glu466* | stop_gained | 0.17 |
PPE35 | 2170031 | c.582C>G | synonymous_variant | 0.12 |
PPE35 | 2170096 | p.Arg173Trp | missense_variant | 0.5 |
PPE35 | 2170513 | c.100C>T | synonymous_variant | 0.15 |
PPE35 | 2170633 | c.-21C>T | upstream_gene_variant | 0.17 |
Rv1979c | 2221808 | p.Val453Leu | missense_variant | 0.14 |
Rv1979c | 2222030 | p.Val379Met | missense_variant | 0.15 |
Rv1979c | 2222095 | p.Ala357Val | missense_variant | 0.29 |
Rv1979c | 2222812 | p.Leu118Ser | missense_variant | 0.22 |
Rv1979c | 2222870 | p.Ala99Thr | missense_variant | 0.25 |
Rv1979c | 2223159 | c.6C>T | synonymous_variant | 0.29 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289145 | p.Asp33Tyr | missense_variant | 0.25 |
pncA | 2289169 | p.Ala25Ser | missense_variant | 0.33 |
pncA | 2289287 | c.-46C>A | upstream_gene_variant | 0.2 |
pncA | 2289318 | c.-77G>T | upstream_gene_variant | 0.17 |
pncA | 2289465 | c.-224G>T | upstream_gene_variant | 0.14 |
pncA | 2289543 | c.-302G>C | upstream_gene_variant | 0.22 |
kasA | 2518602 | p.Gly163Val | missense_variant | 0.15 |
kasA | 2518844 | p.Ala244Ser | missense_variant | 0.25 |
kasA | 2518882 | c.768C>T | synonymous_variant | 0.18 |
kasA | 2519002 | p.Glu296Asp | missense_variant | 0.17 |
kasA | 2519159 | p.Ala349Ser | missense_variant | 0.18 |
kasA | 2519201 | p.Arg363Ser | missense_variant | 0.22 |
eis | 2714219 | p.Ala372Thr | missense_variant | 0.14 |
eis | 2715008 | p.Ala109Ser | missense_variant | 0.13 |
eis | 2715327 | c.6T>C | synonymous_variant | 0.12 |
ahpC | 2725967 | c.-226G>T | upstream_gene_variant | 0.12 |
ahpC | 2726259 | p.Leu23Val | missense_variant | 0.15 |
folC | 2746471 | c.1128C>A | synonymous_variant | 0.14 |
folC | 2746579 | c.1020G>A | synonymous_variant | 0.14 |
folC | 2746590 | p.Gly337Cys | missense_variant | 0.17 |
folC | 2746885 | c.714C>T | synonymous_variant | 0.17 |
folC | 2747420 | p.Pro60His | missense_variant | 0.15 |
folC | 2747755 | c.-157C>A | upstream_gene_variant | 0.2 |
pepQ | 2859642 | c.777C>T | synonymous_variant | 0.2 |
pepQ | 2859680 | p.Leu247Ile | missense_variant | 0.14 |
pepQ | 2859883 | p.Leu179Pro | missense_variant | 0.14 |
pepQ | 2860470 | c.-52G>A | upstream_gene_variant | 0.17 |
ribD | 2987231 | c.393G>A | synonymous_variant | 0.2 |
ribD | 2987358 | p.Asp174Tyr | missense_variant | 0.14 |
ribD | 2987393 | c.555C>T | synonymous_variant | 0.17 |
Rv2752c | 3065353 | p.Arg280Leu | missense_variant | 0.17 |
Rv2752c | 3065647 | p.Pro182Arg | missense_variant | 0.17 |
Rv2752c | 3065942 | p.Glu84* | stop_gained | 0.25 |
Rv2752c | 3066035 | p.Asp53Tyr | missense_variant | 0.14 |
thyX | 3067346 | c.600C>T | synonymous_variant | 0.18 |
thyX | 3067401 | p.Arg182His | missense_variant | 0.15 |
thyX | 3067432 | p.Arg172Ser | missense_variant | 0.17 |
thyX | 3067542 | p.Ala135Asp | missense_variant | 0.33 |
thyA | 3074118 | c.354G>A | synonymous_variant | 0.25 |
thyA | 3074124 | c.348G>A | synonymous_variant | 0.2 |
thyA | 3074311 | p.Ser54Leu | missense_variant | 0.14 |
thyA | 3074373 | p.Gln33His | missense_variant | 0.29 |
thyA | 3074578 | c.-107C>T | upstream_gene_variant | 0.18 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087165 | p.Ala116Thr | missense_variant | 0.2 |
ald | 3087600 | p.Gly261Cys | missense_variant | 0.14 |
ald | 3087719 | c.900C>T | synonymous_variant | 0.15 |
fbiD | 3339069 | c.-49C>A | upstream_gene_variant | 0.15 |
fbiD | 3339199 | p.Pro28Ser | missense_variant | 0.4 |
fbiD | 3339240 | c.123C>T | synonymous_variant | 0.33 |
fbiD | 3339255 | c.138G>A | synonymous_variant | 0.2 |
fbiD | 3339341 | p.Leu75Gln | missense_variant | 0.17 |
Rv3083 | 3448867 | p.His122Tyr | missense_variant | 0.14 |
Rv3083 | 3449030 | p.Ser176Tyr | missense_variant | 0.17 |
fprA | 3473809 | c.-198G>A | upstream_gene_variant | 0.14 |
fprA | 3473947 | c.-60G>T | upstream_gene_variant | 0.13 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474051 | c.45G>T | synonymous_variant | 0.29 |
fprA | 3475052 | p.Asn349Ser | missense_variant | 0.13 |
whiB7 | 3568578 | c.102C>A | synonymous_variant | 0.2 |
whiB7 | 3568592 | p.Ala30Thr | missense_variant | 0.17 |
Rv3236c | 3612427 | c.690G>A | synonymous_variant | 0.15 |
Rv3236c | 3612680 | p.Arg146Gln | missense_variant | 0.25 |
Rv3236c | 3613061 | p.Ala19Val | missense_variant | 0.33 |
fbiA | 3640558 | p.Leu6Met | missense_variant | 0.13 |
fbiA | 3640639 | p.Ala33Pro | missense_variant | 0.11 |
fbiB | 3641112 | c.-423T>C | upstream_gene_variant | 0.17 |
fbiB | 3641687 | p.Lys51Asn | missense_variant | 0.2 |
fbiB | 3641709 | p.Arg59Trp | missense_variant | 0.14 |
fbiB | 3642257 | p.Phe241Leu | missense_variant | 0.12 |
fbiB | 3642657 | p.Val375Ile | missense_variant | 0.29 |
fbiB | 3642711 | p.Leu393Met | missense_variant | 0.15 |
fbiB | 3642722 | c.1188C>T | synonymous_variant | 0.18 |
alr | 3840252 | p.Val390Ala | missense_variant | 0.11 |
alr | 3841495 | c.-75G>A | upstream_gene_variant | 0.17 |
alr | 3841512 | c.-92C>A | upstream_gene_variant | 0.17 |
alr | 3841515 | c.-95C>A | upstream_gene_variant | 0.17 |
alr | 3841525 | c.-105G>T | upstream_gene_variant | 0.17 |
rpoA | 3877571 | p.Pro313Ser | missense_variant | 0.2 |
rpoA | 3877801 | p.Pro236Leu | missense_variant | 0.2 |
rpoA | 3877803 | c.705G>T | synonymous_variant | 0.2 |
ddn | 3986957 | c.114C>T | synonymous_variant | 0.13 |
ddn | 3987021 | c.178C>A | synonymous_variant | 0.15 |
clpC1 | 4038225 | p.Pro827Leu | missense_variant | 0.33 |
clpC1 | 4038676 | p.Val677Phe | missense_variant | 0.12 |
clpC1 | 4039042 | p.Ser555Thr | missense_variant | 0.2 |
clpC1 | 4039107 | p.Arg533Leu | missense_variant | 0.15 |
clpC1 | 4039532 | c.1173C>T | synonymous_variant | 0.14 |
clpC1 | 4040760 | c.-56C>A | upstream_gene_variant | 0.14 |
panD | 4044114 | c.168C>T | synonymous_variant | 0.13 |
panD | 4044225 | p.Asp19Glu | missense_variant | 0.15 |
panD | 4044232 | p.Cys17Phe | missense_variant | 0.15 |
panD | 4044444 | c.-163G>T | upstream_gene_variant | 0.13 |
embC | 4239704 | c.-159C>T | upstream_gene_variant | 0.13 |
embC | 4240657 | c.795G>T | synonymous_variant | 0.13 |
embC | 4240702 | c.840G>T | synonymous_variant | 0.12 |
embC | 4241135 | p.Val425Leu | missense_variant | 0.18 |
embC | 4241419 | c.1557C>T | synonymous_variant | 0.33 |
embC | 4241658 | p.Ser599* | stop_gained | 0.5 |
embC | 4242157 | p.Met765Ile | missense_variant | 0.14 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242744 | p.Thr961Lys | missense_variant | 0.2 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4243423 | p.Ser64Phe | missense_variant | 0.13 |
embA | 4243483 | p.Ala84Gly | missense_variant | 0.11 |
embA | 4243941 | p.Leu237Met | missense_variant | 0.2 |
embA | 4243971 | p.Gly247* | stop_gained | 0.2 |
embA | 4244343 | p.Ala371Thr | missense_variant | 0.14 |
embA | 4244501 | c.1269G>A | synonymous_variant | 0.22 |
embA | 4244564 | c.1332G>T | synonymous_variant | 0.29 |
embA | 4244708 | c.1476C>A | synonymous_variant | 0.14 |
embA | 4245160 | p.Ser643Ile | missense_variant | 0.15 |
embA | 4245822 | p.Pro864Ser | missense_variant | 0.14 |
embA | 4245945 | p.Ile905Val | missense_variant | 0.14 |
embB | 4246605 | p.Thr31Asn | missense_variant | 0.25 |
embB | 4246958 | p.Glu149* | stop_gained | 0.15 |
embB | 4247184 | p.Gly224Val | missense_variant | 0.12 |
embB | 4247395 | c.882C>A | synonymous_variant | 0.13 |
embB | 4247487 | p.Ser325Asn | missense_variant | 0.13 |
embB | 4247595 | p.Cys361Phe | missense_variant | 0.33 |
embB | 4248160 | p.Cys549* | stop_gained | 0.17 |
embB | 4249009 | c.2496G>C | synonymous_variant | 0.14 |
embB | 4249527 | p.Gly1005Asp | missense_variant | 0.2 |
aftB | 4267250 | p.Asp529Glu | missense_variant | 0.14 |
aftB | 4268179 | c.658T>C | synonymous_variant | 0.25 |
aftB | 4268358 | p.Gln160Arg | missense_variant | 0.2 |
aftB | 4268681 | c.155delG | frameshift_variant | 0.17 |
aftB | 4268698 | p.Pro47Ser | missense_variant | 0.14 |
ubiA | 4269215 | p.Arg207Cys | missense_variant | 0.25 |
aftB | 4269495 | c.-659G>T | upstream_gene_variant | 0.15 |
aftB | 4269753 | c.-917G>A | upstream_gene_variant | 0.17 |
ethA | 4326019 | c.1455C>A | synonymous_variant | 0.14 |
ethA | 4326396 | p.Gln360Lys | missense_variant | 0.25 |
ethA | 4326758 | p.Arg239Gln | missense_variant | 0.17 |
ethA | 4327067 | p.Leu136Arg | missense_variant | 1.0 |
ethR | 4327204 | c.-345G>T | upstream_gene_variant | 0.2 |
ethA | 4327391 | p.Pro28Leu | missense_variant | 0.25 |
ethR | 4327636 | p.Leu30Ile | missense_variant | 0.15 |
ethA | 4327998 | c.-525G>A | upstream_gene_variant | 0.18 |
ethA | 4328424 | c.-951C>A | upstream_gene_variant | 0.5 |
whiB6 | 4338319 | p.Glu68Gly | missense_variant | 0.12 |
whiB6 | 4338397 | p.Thr42Lys | missense_variant | 0.22 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407816 | c.387C>T | synonymous_variant | 0.13 |
gid | 4407831 | c.372G>T | synonymous_variant | 0.18 |
gid | 4407851 | p.Arg118Cys | missense_variant | 0.2 |
gid | 4407877 | p.Gly109Val | missense_variant | 0.22 |
gid | 4408441 | c.-239C>A | upstream_gene_variant | 0.2 |