Run ID: ERR4821145
Sample name:
Date: 01-04-2023 17:05:18
Number of reads: 2428700
Percentage reads mapped: 97.91
Strain: lineage4.6
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 763644 | p.Met92Thr | missense_variant | 0.98 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304851 | p.Gly641Cys | missense_variant | 0.29 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473088 | n.1243A>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473100 | n.1255G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473110 | n.1265T>G | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473111 | n.1266A>G | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473121 | n.1276T>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168080 | p.Thr845Ala | missense_variant | 1.0 |
PPE35 | 2170198 | p.Ala139Thr | missense_variant | 1.0 |
PPE35 | 2170744 | c.-133delA | upstream_gene_variant | 1.0 |
PPE35 | 2170792 | c.-180T>C | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
ethA | 4326413 | p.Ala354Val | missense_variant | 1.0 |
ethR | 4327691 | p.Asp48Gly | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |