TB-Profiler result

Run: ERR4821550
Summary

Run ID: ERR4821550

Sample name:

Date: 01-04-2023 17:19:01

Number of reads: 492178

Percentage reads mapped: 64.7

Strain: lineage2.2.1

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage2 East-Asian Beijing RD105 1.0
lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 1.0
lineage2.2.1 East-Asian (Beijing) Beijing-RD181 RD105;RD207;RD181 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472644 n.799C>T non_coding_transcript_exon_variant 0.5 streptomycin
rrs 1473247 n.1402C>A non_coding_transcript_exon_variant 0.67 kanamycin, capreomycin, aminoglycosides, amikacin
rrs 1473329 n.1484G>T non_coding_transcript_exon_variant 0.5 kanamycin, capreomycin, aminoglycosides, amikacin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
mshA 575907 p.Ala187Val missense_variant 1.0
ccsA 620625 p.Ile245Met missense_variant 1.0
ccsA 620754 c.864G>A synonymous_variant 0.18
rpoB 761554 p.Val583Ala missense_variant 0.13
rpoB 761564 c.1758G>C synonymous_variant 0.12
rpoB 761565 p.Met587Leu missense_variant 0.13
rpoB 761570 c.1764T>C synonymous_variant 0.12
rpoB 761573 c.1767C>G synonymous_variant 0.12
rpoB 761600 c.1794T>C synonymous_variant 0.13
rpoB 761603 c.1797C>G synonymous_variant 0.13
rpoB 761612 c.1806G>C synonymous_variant 0.12
rpoB 761615 c.1809A>G synonymous_variant 0.12
rpoB 762003 p.Asn733Gln missense_variant 0.2
rpoB 762017 c.2211A>G synonymous_variant 0.22
rpoB 762026 c.2220G>C synonymous_variant 0.2
rpoB 762053 c.2247T>C synonymous_variant 0.18
rpoB 762057 p.Ile751Val missense_variant 0.18
rpoB 762062 c.2256T>C synonymous_variant 0.18
rpoB 762065 c.2259T>C synonymous_variant 0.18
rpoC 762818 c.-552C>G upstream_gene_variant 0.2
rpoC 762827 c.-543G>C upstream_gene_variant 0.22
rpoB 762832 p.Ser1009Thr missense_variant 0.22
rpoB 762849 p.Tyr1015Asp missense_variant 0.2
rpoC 762857 c.-513C>G upstream_gene_variant 0.22
rpoB 762858 p.Thr1018Ser missense_variant 0.22
rpoC 762863 c.-507T>G upstream_gene_variant 0.27
rpoB 762878 p.Ile1024Met missense_variant 0.27
rpoB 762879 p.Met1025Leu missense_variant 0.27
rpoC 762920 c.-450C>T upstream_gene_variant 0.2
rpoC 762926 c.-444C>G upstream_gene_variant 0.2
rpoC 762929 c.-441G>C upstream_gene_variant 0.2
rpoC 762947 c.-423C>G upstream_gene_variant 0.18
rpoC 762989 c.-381G>C upstream_gene_variant 0.18
rpoC 762995 c.-375G>C upstream_gene_variant 0.2
rpoC 763031 c.-339T>C upstream_gene_variant 0.88
rpoC 763468 c.99G>C synonymous_variant 0.2
rpoC 763483 c.114G>C synonymous_variant 0.23
rpoC 763486 c.117T>G synonymous_variant 0.21
rpoC 763492 c.123G>C synonymous_variant 0.14
rpoC 763504 c.135C>A synonymous_variant 0.25
rpoC 763507 c.138G>C synonymous_variant 0.29
rpoC 763528 c.159G>C synonymous_variant 0.32
rpoC 763531 c.162G>C synonymous_variant 0.24
rpoC 763534 c.165T>C synonymous_variant 0.27
rpoC 763537 c.168C>T synonymous_variant 0.27
rpoC 763546 c.177A>G synonymous_variant 0.27
rpoC 763550 p.Tyr61Ala missense_variant 0.25
rpoC 763570 c.201G>C synonymous_variant 0.26
rpoC 763622 p.Ala85Ser missense_variant 0.22
rpoC 763633 c.264T>C synonymous_variant 0.25
rpoC 763636 c.267T>C synonymous_variant 0.25
rpoC 763639 p.Glu90Asp missense_variant 0.24
rpoC 763642 c.273G>C synonymous_variant 0.24
rpoC 763660 c.291T>G synonymous_variant 0.33
rpoC 763663 c.294C>T synonymous_variant 0.14
rpoC 763669 c.300C>G synonymous_variant 0.27
rpoC 763696 c.327T>C synonymous_variant 0.33
rpoC 763708 c.339G>C synonymous_variant 0.33
rpoC 763714 c.345G>C synonymous_variant 0.25
rpoC 763717 c.348T>C synonymous_variant 0.25
rpoC 763732 c.363C>G synonymous_variant 0.18
rpoC 763744 c.375G>C synonymous_variant 0.17
rpoC 764344 c.975C>T synonymous_variant 0.14
rpoC 764359 c.990C>G synonymous_variant 0.14
rpoC 764371 c.1002G>C synonymous_variant 0.14
rpoC 764377 c.1008C>G synonymous_variant 0.14
rpoC 764380 c.1011G>C synonymous_variant 0.16
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.11
rpoC 764404 c.1035C>T synonymous_variant 0.19
rpoC 764405 c.1036_1038delAGGinsCGC synonymous_variant 0.2
rpoC 764428 c.1059G>C synonymous_variant 0.27
rpoC 764434 c.1065A>G synonymous_variant 0.29
rpoC 764435 c.1066A>C synonymous_variant 0.29
rpoC 764441 p.Ile358Leu missense_variant 0.31
rpoC 764446 c.1077T>C synonymous_variant 0.31
rpoC 764449 c.1080G>C synonymous_variant 0.31
rpoC 764452 c.1083T>C synonymous_variant 0.29
rpoC 764458 c.1089G>C synonymous_variant 0.33
rpoC 764461 c.1092A>G synonymous_variant 0.33
rpoC 764485 c.1116G>C synonymous_variant 0.31
rpoC 764611 c.1242G>T synonymous_variant 0.42
rpoC 764632 c.1263T>C synonymous_variant 0.36
rpoC 764635 c.1266C>G synonymous_variant 0.36
rpoC 764650 c.1281G>C synonymous_variant 0.36
rpoC 764665 c.1296C>G synonymous_variant 0.31
rpoC 764668 c.1299C>T synonymous_variant 0.31
rpoC 764671 c.1302G>C synonymous_variant 0.31
rpoC 764695 c.1326T>C synonymous_variant 0.33
rpoC 764701 c.1332C>G synonymous_variant 0.3
rpoC 764706 p.Leu446Gln missense_variant 0.45
rpoC 764746 c.1377G>T synonymous_variant 0.36
rpoC 764749 c.1380G>C synonymous_variant 0.33
rpoC 764758 c.1389C>G synonymous_variant 0.36
rpoC 764764 c.1395T>C synonymous_variant 0.46
rpoC 764780 c.1411_1412delAGinsTC synonymous_variant 0.42
rpoC 764804 p.Gln479Phe missense_variant 0.3
rpoC 764809 c.1440C>T synonymous_variant 0.3
rpoC 764812 c.1443C>G synonymous_variant 0.3
rpoC 764815 c.1446A>G synonymous_variant 0.27
rpoC 764818 c.1449G>C synonymous_variant 0.27
rpoC 764824 c.1455T>C synonymous_variant 0.33
rpoC 764833 c.1464A>G synonymous_variant 0.43
rpoC 764843 p.Ala492Thr missense_variant 0.43
rpoC 764857 c.1488G>C synonymous_variant 0.29
rpoC 764858 c.1489T>C synonymous_variant 0.2
rpoC 766645 p.Glu1092Asp missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776182 p.Asp767Asn missense_variant 1.0
mmpL5 777805 p.Ile226Phe missense_variant 0.4
mmpS5 778588 p.Gln106His missense_variant 1.0
mmpR5 779188 p.Ile67Val missense_variant 0.2
mmpS5 779615 c.-710C>G upstream_gene_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781655 c.96T>C synonymous_variant 0.13
rpsL 781658 c.99A>G synonymous_variant 0.12
rpsL 781682 c.123T>C synonymous_variant 0.11
rpsL 781700 c.141G>C synonymous_variant 0.1
rpsL 781739 c.180G>A synonymous_variant 0.15
rpsL 781760 c.201T>C synonymous_variant 0.12
rpsL 781790 c.231C>T synonymous_variant 0.14
rpsL 781796 p.Met79Ile missense_variant 0.12
rpsL 781802 c.243G>C synonymous_variant 0.12
rpsL 781805 c.246G>C synonymous_variant 0.13
rpsL 781814 c.255C>T synonymous_variant 0.13
rpsL 781817 c.258G>T synonymous_variant 0.13
rpsL 781933 c.374G>T stop_lost&splice_region_variant 0.12
fbiC 1304802 c.1872G>T synonymous_variant 0.18
Rv1258c 1406760 c.580_581insC frameshift_variant 1.0
embR 1416409 c.939G>A synonymous_variant 0.14
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1472102 n.257G>A non_coding_transcript_exon_variant 1.0
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 1.0
rrs 1472108 n.263C>T non_coding_transcript_exon_variant 1.0
rrs 1472112 n.267C>T non_coding_transcript_exon_variant 1.0
rrs 1472113 n.268T>C non_coding_transcript_exon_variant 1.0
rrs 1472150 n.305T>A non_coding_transcript_exon_variant 0.57
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.62
rrs 1472210 n.365A>C non_coding_transcript_exon_variant 0.14
rrs 1472213 n.368G>A non_coding_transcript_exon_variant 0.13
rrs 1472214 n.369C>G non_coding_transcript_exon_variant 0.13
rrs 1472223 n.378C>G non_coding_transcript_exon_variant 0.17
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.17
rrs 1472228 n.383G>C non_coding_transcript_exon_variant 0.17
rrs 1472235 n.390G>C non_coding_transcript_exon_variant 0.17
rrs 1472236 n.391C>T non_coding_transcript_exon_variant 0.17
rrs 1472240 n.395G>C non_coding_transcript_exon_variant 0.18
rrs 1472242 n.397C>T non_coding_transcript_exon_variant 0.18
rrs 1472251 n.406G>A non_coding_transcript_exon_variant 0.64
rrs 1472253 n.408G>T non_coding_transcript_exon_variant 0.18
rrs 1472259 n.414C>A non_coding_transcript_exon_variant 0.18
rrs 1472266 n.421C>A non_coding_transcript_exon_variant 0.2
rrs 1472286 n.441C>G non_coding_transcript_exon_variant 0.33
rrs 1472344 n.499C>T non_coding_transcript_exon_variant 0.67
rrs 1472389 n.544G>A non_coding_transcript_exon_variant 0.5
rrs 1472400 n.555C>T non_coding_transcript_exon_variant 0.5
rrs 1472422 n.577T>C non_coding_transcript_exon_variant 0.4
rrs 1472558 n.713G>A non_coding_transcript_exon_variant 0.44
rrs 1472569 n.724G>A non_coding_transcript_exon_variant 0.44
rrs 1472581 n.736A>T non_coding_transcript_exon_variant 0.36
rrs 1472607 n.762G>A non_coding_transcript_exon_variant 0.3
rrs 1472655 n.810G>T non_coding_transcript_exon_variant 0.57
rrs 1472660 n.815T>C non_coding_transcript_exon_variant 0.5
rrs 1472673 n.828T>G non_coding_transcript_exon_variant 0.6
rrs 1472674 n.829T>A non_coding_transcript_exon_variant 0.6
rrs 1472675 n.830T>C non_coding_transcript_exon_variant 0.75
rrs 1472677 n.832C>A non_coding_transcript_exon_variant 0.75
rrs 1472682 n.837T>A non_coding_transcript_exon_variant 0.75
rrs 1472683 n.838T>C non_coding_transcript_exon_variant 0.75
rrs 1472686 n.841G>T non_coding_transcript_exon_variant 0.75
rrs 1472687 n.842A>T non_coding_transcript_exon_variant 0.75
rrs 1472692 n.847T>C non_coding_transcript_exon_variant 0.8
rrs 1472697 n.852T>C non_coding_transcript_exon_variant 0.8
rrs 1472714 n.869A>G non_coding_transcript_exon_variant 0.86
rrs 1472734 n.889C>T non_coding_transcript_exon_variant 0.27
rrs 1472741 n.896G>A non_coding_transcript_exon_variant 0.23
rrs 1472742 n.897C>T non_coding_transcript_exon_variant 0.15
rrs 1472781 n.936C>T non_coding_transcript_exon_variant 0.21
rrs 1472790 n.945T>C non_coding_transcript_exon_variant 0.43
rrs 1472793 n.948A>T non_coding_transcript_exon_variant 0.23
rrs 1472803 n.958T>A non_coding_transcript_exon_variant 0.18
rrs 1472812 n.967A>C non_coding_transcript_exon_variant 0.18
rrs 1472824 n.979T>A non_coding_transcript_exon_variant 0.33
rrs 1472825 n.980G>A non_coding_transcript_exon_variant 0.33
rrs 1472828 n.983T>C non_coding_transcript_exon_variant 0.5
rrs 1472895 n.1050C>T non_coding_transcript_exon_variant 0.8
rrs 1472952 n.1107T>C non_coding_transcript_exon_variant 0.9
rrs 1472955 n.1110C>T non_coding_transcript_exon_variant 0.9
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.9
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.2
rrs 1472973 n.1128A>C non_coding_transcript_exon_variant 0.44
rrs 1472974 n.1129A>G non_coding_transcript_exon_variant 0.45
rrs 1472987 n.1142G>A non_coding_transcript_exon_variant 1.0
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 1.0
rrs 1472996 n.1151T>C non_coding_transcript_exon_variant 0.15
rrs 1473022 n.1177G>A non_coding_transcript_exon_variant 0.58
rrs 1473026 n.1181T>C non_coding_transcript_exon_variant 0.58
rrs 1473035 n.1190G>A non_coding_transcript_exon_variant 0.67
rrs 1473055 n.1210C>T non_coding_transcript_exon_variant 0.58
rrs 1473056 n.1211A>T non_coding_transcript_exon_variant 0.62
rrs 1473066 n.1221A>G non_coding_transcript_exon_variant 0.71
rrs 1473089 n.1244A>T non_coding_transcript_exon_variant 0.6
rrs 1473093 n.1248C>T non_coding_transcript_exon_variant 0.62
rrs 1473100 n.1255G>A non_coding_transcript_exon_variant 0.56
rrs 1473102 n.1257C>T non_coding_transcript_exon_variant 0.56
rrs 1473104 n.1259C>T non_coding_transcript_exon_variant 0.56
rrs 1473110 n.1265T>G non_coding_transcript_exon_variant 0.56
rrs 1473111 n.1266A>G non_coding_transcript_exon_variant 0.56
rrs 1473115 n.1270G>T non_coding_transcript_exon_variant 0.56
rrs 1473121 n.1276T>C non_coding_transcript_exon_variant 0.67
rrs 1473122 n.1277T>A non_coding_transcript_exon_variant 0.67
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.83
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.86
rrs 1473252 n.1407T>C non_coding_transcript_exon_variant 0.67
rrs 1473259 n.1414C>T non_coding_transcript_exon_variant 0.57
rrs 1473276 n.1431A>G non_coding_transcript_exon_variant 0.67
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 0.57
rrs 1473301 n.1456T>C non_coding_transcript_exon_variant 0.67
rrs 1473315 n.1470T>C non_coding_transcript_exon_variant 0.5
rrs 1473317 n.1472G>A non_coding_transcript_exon_variant 0.5
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 1.0
rrl 1474155 n.498G>A non_coding_transcript_exon_variant 1.0
rrl 1474164 n.507C>T non_coding_transcript_exon_variant 1.0
rrl 1474174 n.517A>G non_coding_transcript_exon_variant 0.5
rrl 1474181 n.524C>A non_coding_transcript_exon_variant 0.5
rrl 1474183 n.526T>C non_coding_transcript_exon_variant 0.75
rrl 1474184 n.527C>T non_coding_transcript_exon_variant 0.67
rrl 1474186 n.529A>T non_coding_transcript_exon_variant 0.5
rrl 1474202 n.545T>C non_coding_transcript_exon_variant 0.75
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.38
rrl 1474488 n.831G>T non_coding_transcript_exon_variant 0.5
rrl 1474498 n.841G>T non_coding_transcript_exon_variant 0.44
rrl 1474505 n.848C>G non_coding_transcript_exon_variant 0.44
rrl 1474516 n.859C>A non_coding_transcript_exon_variant 0.6
rrl 1474529 n.872A>C non_coding_transcript_exon_variant 0.5
rrl 1474530 n.873G>A non_coding_transcript_exon_variant 0.5
rrl 1474537 n.880G>A non_coding_transcript_exon_variant 0.67
rrl 1474539 n.882C>T non_coding_transcript_exon_variant 0.5
rrl 1474540 n.883T>G non_coding_transcript_exon_variant 0.5
rrl 1474626 n.969T>C non_coding_transcript_exon_variant 0.3
rrl 1474627 n.970G>A non_coding_transcript_exon_variant 0.3
rrl 1474632 n.975G>T non_coding_transcript_exon_variant 0.33
rrl 1474636 n.979A>T non_coding_transcript_exon_variant 0.33
rrl 1474637 n.980C>T non_coding_transcript_exon_variant 0.33
rrl 1474639 n.982G>C non_coding_transcript_exon_variant 0.33
rrl 1474662 n.1005C>A non_coding_transcript_exon_variant 0.4
rrl 1474676 n.1019T>A non_coding_transcript_exon_variant 1.0
rrl 1474688 n.1031G>T non_coding_transcript_exon_variant 0.67
rrl 1474734 n.1077G>T non_coding_transcript_exon_variant 0.5
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.4
rrl 1474904 n.1247G>C non_coding_transcript_exon_variant 0.67
rrl 1474905 n.1248T>C non_coding_transcript_exon_variant 0.67
rrl 1474913 n.1256T>C non_coding_transcript_exon_variant 0.67
rrl 1474932 n.1275C>T non_coding_transcript_exon_variant 0.67
rrl 1475713 n.2056C>T non_coding_transcript_exon_variant 0.67
rrl 1475722 n.2065G>T non_coding_transcript_exon_variant 0.5
rrl 1475747 n.2090A>G non_coding_transcript_exon_variant 0.5
rrl 1475753 n.2096C>G non_coding_transcript_exon_variant 0.38
rrl 1475757 n.2101_2110delACCCGCAAGG non_coding_transcript_exon_variant 0.67
rrl 1475769 n.2112T>C non_coding_transcript_exon_variant 0.83
rrl 1475769 n.2112_2113insAGTCTTTGACTGC non_coding_transcript_exon_variant 0.67
rrl 1475775 n.2118G>T non_coding_transcript_exon_variant 0.38
rrl 1475781 n.2124T>C non_coding_transcript_exon_variant 0.57
rrl 1476160 n.2503T>C non_coding_transcript_exon_variant 0.5
rrl 1476194 n.2537A>G non_coding_transcript_exon_variant 1.0
rrl 1476200 n.2543A>T non_coding_transcript_exon_variant 1.0
rrl 1476201 n.2544C>T non_coding_transcript_exon_variant 1.0
rrl 1476214 n.2557G>T non_coding_transcript_exon_variant 0.67
rrl 1476221 n.2564T>C non_coding_transcript_exon_variant 0.67
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 1.0
rrl 1476337 n.2680C>T non_coding_transcript_exon_variant 0.67
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.8
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 1.0
rrl 1476428 n.2771C>T non_coding_transcript_exon_variant 0.86
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.5
rpsA 1833653 p.Ile38Leu missense_variant 0.2
rpsA 1833661 c.120A>G synonymous_variant 0.2
rpsA 1833668 p.Ile43Val missense_variant 0.18
rpsA 1833676 c.135A>G synonymous_variant 0.15
rpsA 1833685 c.144G>C synonymous_variant 0.14
rpsA 1833694 c.153G>C synonymous_variant 0.13
rpsA 1833697 c.156C>G synonymous_variant 0.12
rpsA 1833721 c.180A>G synonymous_variant 0.13
rpsA 1833979 c.438T>C synonymous_variant 0.2
rpsA 1833985 c.444G>C synonymous_variant 0.14
rpsA 1833994 c.453G>C synonymous_variant 0.15
rpsA 1833997 c.456G>C synonymous_variant 0.15
rpsA 1834012 c.471G>C synonymous_variant 0.15
rpsA 1834015 c.474G>C synonymous_variant 0.14
rpsA 1834024 c.483G>C synonymous_variant 0.13
rpsA 1834034 p.Ile165Val missense_variant 0.12
rpsA 1834040 p.Lys167Gln missense_variant 0.2
rpsA 1834043 p.Glu168Lys missense_variant 0.13
rpsA 1834046 p.Ile169Leu missense_variant 0.13
rpsA 1834054 c.513C>G synonymous_variant 0.14
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834213 c.672G>C synonymous_variant 0.15
rpsA 1834219 c.678C>G synonymous_variant 0.14
rpsA 1834222 c.681T>C synonymous_variant 0.14
rpsA 1834225 c.684C>G synonymous_variant 0.14
rpsA 1834231 c.690T>C synonymous_variant 0.14
rpsA 1834240 c.699T>C synonymous_variant 0.12
rpsA 1834243 c.702G>C synonymous_variant 0.12
rpsA 1834249 c.708T>C synonymous_variant 0.18
rpsA 1834261 c.720A>G synonymous_variant 0.22
rpsA 1834264 c.723G>C synonymous_variant 0.2
rpsA 1834294 c.753G>C synonymous_variant 0.18
rpsA 1834298 p.Gln253Glu missense_variant 0.12
rpsA 1834303 c.762T>G synonymous_variant 0.12
rpsA 1834306 c.765T>C synonymous_variant 0.12
rpsA 1834307 p.Asp256Gln missense_variant 0.12
rpsA 1834327 c.786G>C synonymous_variant 0.11
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102709 p.Tyr112Asn missense_variant 0.11
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2222617 p.Trp183Ser missense_variant 0.17
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
ahpC 2726613 p.Asn141Asp missense_variant 0.18
folC 2746895 p.Gly235Ala missense_variant 0.17
ribD 2987445 p.Val203Ile missense_variant 0.18
thyA 3074035 c.436delT frameshift_variant 0.22
ald 3086788 c.-32T>C upstream_gene_variant 1.0
Rv3083 3449396 c.894delC frameshift_variant 0.14
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fprA 3475118 p.Asn371Ser missense_variant 0.25
Rv3236c 3612506 p.His204Leu missense_variant 0.29
Rv3236c 3612717 p.Ala134Thr missense_variant 0.18
Rv3236c 3612813 p.Thr102Ala missense_variant 1.0
alr 3841442 c.-22G>T upstream_gene_variant 0.13
clpC1 4039730 c.975C>G synonymous_variant 0.22
clpC1 4039789 p.Ser306Thr missense_variant 0.18
clpC1 4039977 p.Lys243Arg missense_variant 0.2
clpC1 4039988 c.717C>G synonymous_variant 0.18
clpC1 4039991 c.714G>C synonymous_variant 0.17
clpC1 4039994 p.Glu237Asp missense_variant 0.17
clpC1 4040001 p.His235Arg missense_variant 0.15
clpC1 4040003 p.Val234Asp missense_variant 0.15
clpC1 4040009 c.696C>G synonymous_variant 0.18
clpC1 4040013 p.Gln231Leu missense_variant 0.11
clpC1 4040015 c.690G>C synonymous_variant 0.16
clpC1 4040021 c.684A>C synonymous_variant 0.16
clpC1 4040024 c.681A>G synonymous_variant 0.26
clpC1 4040032 p.Val225Ile missense_variant 0.11
clpC1 4040033 c.672G>C synonymous_variant 0.17
clpC1 4040036 c.669C>G synonymous_variant 0.12
clpC1 4040051 c.654C>G synonymous_variant 0.11
clpC1 4040072 c.633C>T synonymous_variant 0.12
embC 4240277 c.415T>C synonymous_variant 0.15
embC 4241822 p.Phe654Leu missense_variant 0.2
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4243460 c.228C>T synonymous_variant 1.0
aftB 4267647 p.Asp397Gly missense_variant 1.0
aftB 4268215 p.Arg208Cys missense_variant 0.22
ubiA 4269946 c.-113G>T upstream_gene_variant 0.14
ubiA 4270001 c.-168C>T upstream_gene_variant 0.13
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407927 p.Glu92Asp missense_variant 1.0