Run ID: ERR4828747
Sample name:
Date: 01-04-2023 19:03:34
Number of reads: 1296038
Percentage reads mapped: 54.45
Strain: lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoB | 759859 | p.Pro18Leu | missense_variant | 0.12 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302992 | p.Ala21Glu | missense_variant | 0.13 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
atpE | 1460980 | c.-65A>T | upstream_gene_variant | 0.14 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472210 | n.365A>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472353 | n.510delC | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472887 | n.1042G>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472958 | n.1113A>T | non_coding_transcript_exon_variant | 0.28 |
rrs | 1472959 | n.1114T>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472972 | n.1127T>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472974 | n.1130_1133delTGGT | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472982 | n.1137G>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472987 | n.1142G>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472988 | n.1143T>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473002 | n.1157G>T | non_coding_transcript_exon_variant | 0.21 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473008 | n.1163C>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1473038 | n.1193A>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473044 | n.1199C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474939 | n.1282C>T | non_coding_transcript_exon_variant | 0.2 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2103079 | c.-37T>C | upstream_gene_variant | 0.18 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
clpC1 | 4040605 | p.Leu34Ile | missense_variant | 0.29 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
aftB | 4266979 | p.Gly620Arg | missense_variant | 0.12 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
ethA | 4326524 | p.Ile317Thr | missense_variant | 0.1 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407620 | p.Tyr195His | missense_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |