Run ID: ERR4829264
Sample name:
Date: 01-04-2023 19:22:58
Number of reads: 5909082
Percentage reads mapped: 91.45
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472754 | n.909G>T | non_coding_transcript_exon_variant | 0.45 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472827 | n.982G>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472828 | n.983T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472887 | n.1042G>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472936 | n.1091C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1473002 | n.1157G>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1473008 | n.1163C>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473044 | n.1199C>G | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473051 | n.1206T>C | non_coding_transcript_exon_variant | 0.3 |
rrs | 1473053 | n.1208T>G | non_coding_transcript_exon_variant | 0.31 |
rrs | 1473062 | n.1217T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473068 | n.1223A>G | non_coding_transcript_exon_variant | 0.3 |
rrs | 1473080 | n.1235C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474218 | n.561T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474308 | n.651G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474466 | n.809G>A | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474476 | n.819C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474483 | n.826C>G | non_coding_transcript_exon_variant | 0.14 |
fabG1 | 1673162 | c.-278T>C | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2155595 | c.517C>T | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
Rv3236c | 3612047 | p.Ala357Val | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246820 | p.Pro103Thr | missense_variant | 1.0 |
embB | 4248094 | c.1581C>T | synonymous_variant | 1.0 |
ethA | 4326505 | c.969C>G | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |