Run ID: ERR551493
Sample name:
Date: 15-08-2022 10:52:36
Number of reads: 528639
Percentage reads mapped: 99.64
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6943 | c.-359G>C | upstream_gene_variant | 0.1 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9370 | p.Leu690Pro | missense_variant | 0.09 |
fgd1 | 491039 | p.Ile86Thr | missense_variant | 0.13 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
fgd1 | 491789 | p.Gly336Asp | missense_variant | 0.17 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304070 | c.1140C>G | synonymous_variant | 0.1 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473415 | n.-243G>A | upstream_gene_variant | 0.11 |
rrl | 1475383 | n.1726T>C | non_coding_transcript_exon_variant | 0.17 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154787 | p.Val442Asp | missense_variant | 0.18 |
katG | 2156220 | c.-109G>A | upstream_gene_variant | 0.1 |
PPE35 | 2169071 | c.1542A>G | synonymous_variant | 0.21 |
Rv1979c | 2222807 | p.Val120Leu | missense_variant | 0.12 |
Rv1979c | 2223122 | p.Gly15Ser | missense_variant | 0.12 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2290016 | c.-775T>C | upstream_gene_variant | 0.11 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
eis | 2715469 | c.-137T>C | upstream_gene_variant | 0.1 |
ahpC | 2726488 | p.Gln99Arg | missense_variant | 0.11 |
folC | 2746184 | p.Val472Ala | missense_variant | 0.11 |
folC | 2747010 | p.Ile197Leu | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612773 | p.Gly115Asp | missense_variant | 1.0 |
fbiB | 3641654 | c.120A>G | synonymous_variant | 0.2 |
fbiB | 3641824 | p.Asn97Ser | missense_variant | 0.11 |
alr | 3841554 | c.-134T>C | upstream_gene_variant | 0.1 |
rpoA | 3878147 | p.Pro121Thr | missense_variant | 0.11 |
clpC1 | 4039817 | c.888A>G | synonymous_variant | 0.1 |
clpC1 | 4040818 | c.-114A>G | upstream_gene_variant | 0.14 |
embC | 4240449 | p.Gln196Arg | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4243686 | p.Phe152Ile | missense_variant | 0.12 |
embA | 4244146 | p.Asp305Gly | missense_variant | 0.11 |
embB | 4248663 | p.Val717Ala | missense_variant | 0.09 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |