Run ID: ERR6358958
Sample name:
Date: 02-04-2023 02:26:01
Number of reads: 947261
Percentage reads mapped: 99.68
Strain: lineage4.6.1.2
Drug-resistance: MDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.6 | Euro-American | T;LAM | None | 1.0 |
lineage4.6.1 | Euro-American (Uganda) | T2 | RD724 | 1.0 |
lineage4.6.1.2 | Euro-American | T2 | RD724 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
katG | 2155168 | p.Ser315Thr | missense_variant | 1.0 | isoniazid |
pncA | 2288820 | p.Gln141Pro | missense_variant | 1.0 | pyrazinamide |
embB | 4249518 | p.His1002Arg | missense_variant | 1.0 | ethambutol |
ethA | 4326249 | c.1215_1224delGTTGAATTAC | frameshift_variant | 1.0 | ethionamide, ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7539 | p.Thr80Ala | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 764810 | p.Pro481Thr | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpS5 | 778842 | p.Gly22Ser | missense_variant | 0.14 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303016 | p.Val29Gly | missense_variant | 0.3 |
fbiC | 1304554 | c.1625_1626delAC | frameshift_variant | 0.11 |
embR | 1416410 | p.Leu313Arg | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475557 | n.1902delG | non_coding_transcript_exon_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.25 |
PPE35 | 2170692 | c.-80T>G | upstream_gene_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289896 | c.-655C>T | upstream_gene_variant | 0.11 |
eis | 2714308 | p.Pro342Leu | missense_variant | 1.0 |
ahpC | 2726338 | p.Val49Gly | missense_variant | 0.22 |
Rv2752c | 3065920 | p.Pro91Leu | missense_variant | 1.0 |
thyX | 3067959 | c.-14C>A | upstream_gene_variant | 0.1 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
rpoA | 3877967 | p.Thr181Ala | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243217 | c.-16C>A | upstream_gene_variant | 1.0 |
embA | 4245055 | p.Thr608Asn | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408094 | p.Gly37Arg | missense_variant | 1.0 |