Rv3794 - c.-16C>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
2 Sensitive
8 RR-TB
23 HR-TB
366 MDR-TB
181 Pre-XDR-TB
32 XDR-TB
2 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 254 |
| lineage4.3.4.2.1 | 2 |
| lineage4.3.3 | 106 |
| lineage3 | 33 |
| lineage2.2.1;lineage4.3.3 | 4 |
| lineage2.2.1.1 | 20 |
| lineage4 | 5 |
| lineage4.1.1.3 | 13 |
| lineage4.2.1 | 4 |
| lineage4.6.1.2 | 33 |
| lineage2.2.1;lineage2.2.2 | 1 |
| lineage2.2.1;lineage4.1.1 | 1 |
| lineage4.2.2.2 | 13 |
| lineage4.4.2 | 8 |
| lineage4.1.2.1 | 13 |
| lineage4.1.3 | 14 |
| lineage1.2.2.2;lineage2.2.1 | 2 |
| lineage4.8 | 11 |
| lineage1.1.2;lineage2.2.1 | 2 |
| lineage2.2.1;lineage4.2.1 | 2 |
| lineage2.2.1;lineage4.1.1.3 | 1 |
| lineage1.1.2;lineage3 | 1 |
| lineage3.1 | 2 |
| lineage4.1.1.1 | 4 |
| lineage2.2.1;lineage4 | 3 |
| lineage1.2.2.2;lineage3 | 1 |
| lineage3.1.2 | 2 |
| lineage4.3.4.2 | 4 |
| lineage2.2.1.2 | 1 |
| lineage4.4.1.1 | 5 |
| lineage2.2.2 | 7 |
| lineage4.6.1.1 | 3 |
| lineage3.1.2.1 | 4 |
| lineage4.3.4.1 | 7 |
| lineage4.6.2.2 | 2 |
| lineage1.1.1.1 | 1 |
| lineage1.1.1;lineage2.2.1 | 1 |
| lineage2.2.1;lineage3.1.2 | 1 |
| lineage4.2.2.1 | 2 |
| lineage4.2.2 | 4 |
| lineage1.1.1 | 1 |
| lineage1.2.1.2.1 | 2 |
| lineage4.1.3;lineage6.3.1 | 1 |
| lineage4.1.2;lineage4.3.3 | 1 |
| lineage1.1.2 | 1 |
| lineage4.5 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.2.1 | 2 |
| lineage5.1.1 | 2 |
| lineage4.1.1 | 1 |
| lineage2.2.1.1;lineage3 | 1 |
| lineage2.2.1.1;lineage4.2.2 | 1 |
| lineage5.1.5 | 1 |
| lineage3;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 614 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR25207397 | Pre-XDR-TB | lineage2.2.1 | None | ERR3077958 | RR-TB | lineage4.3.4.2.1 | None | SRR22461585 | MDR-TB | lineage4.3.3 | None | SRR28706657 | MDR-TB | lineage4.3.3 | None | ERR4800097 | Pre-XDR-TB | lineage3 | None | SRR16186844 | XDR-TB | lineage2.2.1 | None | SRR13232400 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR2307398 | MDR-TB | lineage2.2.1 | None | ERR133910 | Pre-XDR-TB | lineage2.2.1 | ru | SAMN02419547 | MDR-TB | lineage2.2.1 | by | SAMN02419565 | Pre-XDR-TB | lineage2.2.1 | by | SAMN02419587 | Pre-XDR-TB | lineage2.2.1 | by | SRR25827714 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR15276981 | XDR-TB | lineage3 | None | SRR24710243 | Pre-XDR-TB | lineage4.3.3 | None | SRR28393316 | MDR-TB | lineage4 | None | SRR20969999 | MDR-TB | lineage4.1.1.3 | None | DRR184607 | MDR-TB | lineage2.2.1 | vn | SRR16088044 | MDR-TB | lineage4.3.3 | None | ERR13281471 | MDR-TB | lineage4.3.3 | None | ERR5864567 | MDR-TB | lineage2.2.1 | None | SRR11662695 | MDR-TB | lineage2.2.1 | None | ERR2517484 | MDR-TB | lineage2.2.1 | nl | ERR11043659 | MDR-TB | lineage4.3.3 | None | ERR10762355 | MDR-TB | lineage4.2.1 | None | ERR11044488 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR6359057 | MDR-TB | lineage4.6.1.2 | None | ERR6358962 | MDR-TB | lineage4.6.1.2 | None | SRR10040450 | MDR-TB | lineage2.2.1 | None | ERR6359092 | MDR-TB | lineage4.6.1.2 | None | SRR24710249 | MDR-TB | lineage4.3.3 | None | ERR13288791 | XDR-TB | lineage2.2.1;lineage2.2.2 | None | SRR15276983 | XDR-TB | lineage3 | None | ERR11081185 | MDR-TB | lineage2.2.1 | None | ERR4276858 | MDR-TB | lineage4.3.3 | None | ERR9806615 | Pre-XDR-TB | lineage2.2.1 | None | SRR7516333 | Pre-XDR-TB | lineage2.2.1 | None | ERR552425 | MDR-TB | lineage4.3.3 | None | ERR13285168 | MDR-TB | lineage4.3.3 | None | SRR14801647 | Pre-XDR-TB | lineage2.2.1 | None | SRR28393746 | MDR-TB | lineage4.1.1.3 | None | SRR6356942 | MDR-TB | lineage4.3.3 | None | ERR5865905 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864564 | MDR-TB | lineage2.2.1 | None | ERR5864575 | MDR-TB | lineage2.2.1 | None | ERR5864578 | MDR-TB | lineage2.2.1 | None | SRR14782799 | HR-TB | lineage2.2.1 | None | SRR28394226 | Pre-XDR-TB | lineage2.2.1;lineage4.1.1 | None | SRR11662257 | MDR-TB | lineage2.2.1 | None | ERR7737644 | MDR-TB | lineage4.2.2.2 | None | ERR027463 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662570 | Pre-XDR-TB | lineage2.2.1 | None | SRR1723976 | RR-TB | lineage4.4.2 | cn | SRR29772448 | Pre-XDR-TB | lineage3 | None | DRR130128 | MDR-TB | lineage2.2.1 | None | ERR5864583 | MDR-TB | lineage2.2.1 | None | ERR3275604 | MDR-TB | lineage2.2.1 | nl | SRR14801915 | MDR-TB | lineage2.2.1 | None | SRR10147683 | MDR-TB | lineage4.3.3 | None | SRR10303296 | MDR-TB | lineage4.3.3 | None | ERR5866264 | MDR-TB | lineage2.2.1 | None | ERR7737727 | MDR-TB | lineage4.2.2.2 | None | ERR2653055 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4423540 | MDR-TB | lineage4.1.3 | None | SRR11662720 | Pre-XDR-TB | lineage2.2.1 | None | ERR6358989 | MDR-TB | lineage4.6.1.2 | None | ERR11043621 | MDR-TB | lineage4.3.3 | None | SRR10147705 | MDR-TB | lineage3 | None | SRR7652970 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082336 | MDR-TB | lineage4.6.1.2 | None | SRR15276982 | XDR-TB | lineage3 | None | SRR998773 | Pre-XDR-TB | lineage4.1.3 | None | ERR5866463 | MDR-TB | lineage2.2.1 | None | ERR11043059 | MDR-TB | lineage4.3.3 | None | ERR13276310 | Pre-XDR-TB | lineage4.3.3 | None | SRR29017661 | MDR-TB | lineage4 | None | SRR25207394 | Pre-XDR-TB | lineage2.2.1 | None | ERR13273367 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR28868784 | HR-TB | lineage2.2.1 | None | SRR11662566 | MDR-TB | lineage2.2.1 | None | SRR20969899 | MDR-TB | lineage2.2.1 | None | SRR28044336 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR21277271 | MDR-TB | lineage4.4.2 | None | ERR11082330 | Pre-XDR-TB | lineage4.3.3 | None | ERR13284597 | MDR-TB | lineage4.3.3 | None | ERR13285116 | Pre-XDR-TB | lineage4.3.3 | None | SRR25827822 | MDR-TB | lineage2.2.1.1 | None | SRR25827375 | Pre-XDR-TB | lineage1.2.2.2;lineage2.2.1 | None | SRR29539176 | MDR-TB | lineage4.3.3 | None | ERR6358832 | MDR-TB | lineage4.6.1.2 | None | ERR6358830 | MDR-TB | lineage4.6.1.2 | None | ERR5864580 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866263 | MDR-TB | lineage2.2.1 | None | ERR7737919 | MDR-TB | lineage4.2.2.2 | None | SRR6832028 | MDR-TB | lineage2.2.1 | None | ERR8773902 | MDR-TB | lineage4.3.3 | None | ERR552422 | MDR-TB | lineage4.3.3 | None | SRR29231747 | MDR-TB | lineage4.6.1.2 | None | SRR7657751 | MDR-TB | lineage4.3.3 | None | SRR24256063 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043267 | MDR-TB | lineage4.3.3 | None | SRR29273674 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR998745 | MDR-TB | lineage4.1.3 | None | ERR1654680 | MDR-TB | lineage4.6.1.2 | None | SRR29356714 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539573 | MDR-TB | lineage4.3.3 | None | ERR5865809 | MDR-TB | lineage4.3.3 | None | ERR7911022 | MDR-TB | lineage4.2.1 | None | SRR5153078 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284358 | MDR-TB | lineage4.8 | None | SRR25207234 | Pre-XDR-TB | lineage2.2.1 | None | ERR13258444 | MDR-TB | lineage2.2.1 | None | ERR13290878 | HR-TB | lineage1.1.2;lineage2.2.1 | None | ERR403240 | MDR-TB | lineage2.2.1 | None | SRR28351329 | Pre-XDR-TB | lineage2.2.1 | None | SRR18593222 | Pre-XDR-TB | lineage4.2.2.2 | None | SRR29016771 | Pre-XDR-TB | lineage2.2.1 | None | SRR067516 | MDR-TB | lineage2.2.1.1 | None | SRR14801500 | MDR-TB | lineage2.2.1 | None | SRR28239733 | MDR-TB | lineage2.2.1 | None | ERR13284872 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR6785501 | MDR-TB | lineage2.2.1 | None | ERR3639706 | MDR-TB | lineage4.3.3 | None | ERR13284631 | MDR-TB | lineage4.3.3 | None | ERR13266441 | XDR-TB | lineage2.2.1;lineage4.1.1.3 | None | SRR25827595 | Pre-XDR-TB | lineage2.2.1 | None | SRR6964556 | RR-TB | lineage1.1.2;lineage3 | None | ERR2510490 | Pre-XDR-TB | lineage3 | pk | ERR551478 | MDR-TB | lineage2.2.1 | None | SRR29017014 | MDR-TB | lineage3.1 | None | SRR6964507 | MDR-TB | lineage3 | None | SRR14088394 | MDR-TB | lineage3 | None | SRR29289154 | XDR-TB | lineage3 | None | SRR29289158 | XDR-TB | lineage3 | None | SRR29289159 | Pre-XDR-TB | lineage3 | None | SRR29289363 | Pre-XDR-TB | lineage3 | None | SRR29289364 | Pre-XDR-TB | lineage3 | None | SRR1049970 | Pre-XDR-TB | lineage4.1.3 | None | ERR552423 | MDR-TB | lineage4.3.3 | None | ERR1034981 | MDR-TB | lineage4.1.1.1 | za | ERR4798868 | Pre-XDR-TB | lineage2.2.1;lineage4 | in | ERR8665703 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02231161 | Pre-XDR-TB | lineage4.1.3 | ml | SRR28240211 | MDR-TB | lineage2.2.1 | None | ERR6359097 | MDR-TB | lineage4.6.1.2 | None | SRR25827457 | Pre-XDR-TB | lineage1.2.2.2;lineage3 | None | SRR1002694 | HR-TB | lineage2.2.1 | None | ERR13284709 | MDR-TB | lineage4.3.3 | None | SRR28351445 | Pre-XDR-TB | lineage3.1.2 | None | ERR4822399 | Pre-XDR-TB | lineage4.3.4.2 | ua | ERR11043007 | MDR-TB | lineage4.3.3 | None | ERR11082787 | MDR-TB | lineage4.3.3 | None | SRR998746 | MDR-TB | lineage4.1.3 | None | ERR5865810 | MDR-TB | lineage4.3.3 | None | SRR23310968 | MDR-TB | lineage2.2.1 | None | ERR12796608 | Pre-XDR-TB | lineage3.1.2 | None | ERR13266517 | XDR-TB | lineage2.2.1 | None | SRR5065524 | MDR-TB | lineage2.2.1 | vn | SRR23938615 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207126 | MDR-TB | lineage2.2.1.2 | None | ERR4799985 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR5864566 | MDR-TB | lineage2.2.1 | None | ERR5864568 | MDR-TB | lineage2.2.1 | None | SRR24709901 | MDR-TB | lineage4.3.3 | None | SRR16186845 | XDR-TB | lineage2.2.1 | None | SRR5153594 | MDR-TB | lineage4.3.3 | None | ERR8773519 | HR-TB | lineage4.4.1.1 | None | ERR13284571 | Pre-XDR-TB | lineage4.3.3 | None | ERR11488399 | MDR-TB | lineage4.1.1.3 | None | SRR21887709 | Pre-XDR-TB | lineage2.2.2 | None | SRR25389550 | Pre-XDR-TB | lineage2.2.1 | None | ERR11080933 | MDR-TB | lineage4.3.3 | None | ERR9993185 | XDR-TB | lineage2.2.1 | None | SRR25827601 | XDR-TB | lineage2.2.1.1 | None | ERR11081039 | MDR-TB | lineage4.8 | None | ERR11081748 | MDR-TB | lineage4.3.3 | None | ERR7737881 | MDR-TB | lineage2.2.1 | None | ERR5864577 | MDR-TB | lineage2.2.1 | None | SRR5153086 | Pre-XDR-TB | lineage2.2.1 | None | ERR11081850 | MDR-TB | lineage4.3.3 | None | ERR8773733 | HR-TB | lineage2.2.1 | None | ERR11043275 | MDR-TB | lineage4.3.3 | None | ERR7910955 | MDR-TB | lineage2.2.1 | None | SRR6785479 | MDR-TB | lineage2.2.1 | None | SRR28044338 | Pre-XDR-TB | lineage2.2.1 | None | SRR28706662 | MDR-TB | lineage4.3.3 | None | ERR4827652 | MDR-TB | lineage2.2.1 | None | ERR11081013 | MDR-TB | lineage4.3.3 | None | ERR7737752 | MDR-TB | lineage2.2.1 | None | DRR130140 | MDR-TB | lineage2.2.1 | None | ERR11081224 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | ERR7975669 | MDR-TB | lineage4.3.3 | None | ERR6358846 | MDR-TB | lineage4.6.1.1 | None | ERR6358955 | MDR-TB | lineage4.6.1.2 | None | ERR8774127 | MDR-TB | lineage4.1.3 | None | ERR6358919 | MDR-TB | lineage4.6.1.2 | None | SRR22461701 | HR-TB | lineage4.1.2.1 | None | SRR6257069 | HR-TB | lineage2.2.1 | None | SRR29230791 | MDR-TB | lineage4.6.1.2 | None | SRR29017234 | Pre-XDR-TB | lineage4 | None | SRR29274163 | MDR-TB | lineage4.1.2.1 | None | ERR11082039 | Pre-XDR-TB | lineage4.3.3 | None | SRR1723739 | Pre-XDR-TB | lineage2.2.1 | cn | ERR13284923 | MDR-TB | lineage4.3.3 | None | ERR13284234 | MDR-TB | lineage2.2.1 | None | SRR14801330 | MDR-TB | lineage2.2.1;lineage4 | None | SRR6832486 | MDR-TB | lineage2.2.1 | None | SRR1723498 | MDR-TB | lineage2.2.1 | cn | ERR8665702 | Pre-XDR-TB | lineage2.2.1 | None | SRR12199484 | MDR-TB | lineage2.2.1 | None | ERR13284672 | MDR-TB | lineage4.3.3 | None | SRR29055614 | MDR-TB | lineage2.2.1 | None | ERR2446458 | MDR-TB | lineage2.2.1 | nl | SRR11662383 | MDR-TB | lineage2.2.1 | None | ERR2179644 | RR-TB | lineage4.4.2 | cn | ERR8773998 | HR-TB | lineage2.2.1 | None | ERR13285723 | MDR-TB | lineage2.2.1 | None | ERR9993055 | XDR-TB | lineage2.2.1 | None | ERR13284762 | MDR-TB | lineage4.3.3 | None | SRR7653080 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR29016913 | MDR-TB | lineage3.1.2.1 | None | SRR1159044 | MDR-TB | lineage2.2.1 | None | ERR7737890 | MDR-TB | lineage4.2.2.2 | None | ERR13284722 | MDR-TB | lineage4.3.3 | None | ERR3639717 | Pre-XDR-TB | lineage4.8 | None | ERR1036281 | MDR-TB | lineage4.3.4.1 | pt | ERR13285110 | Pre-XDR-TB | lineage4.3.3 | None | ERR8774125 | HR-TB | lineage4.1.3 | None | SRR28240143 | HR-TB | lineage2.2.1 | None | SRR28239550 | HR-TB | lineage2.2.1 | None | ERR5864585 | MDR-TB | lineage2.2.1 | None | ERR13284949 | MDR-TB | lineage4.3.3 | None | ERR3078015 | MDR-TB | lineage4.3.4.2.1 | None | SRR24673521 | MDR-TB | lineage2.2.1 | None | ERR11082476 | MDR-TB | lineage4.8 | None | ERR13285909 | MDR-TB | lineage4.2.1 | None | ERR13285735 | MDR-TB | lineage2.2.1 | None | SRR069957 | MDR-TB | lineage2.2.1.1 | None | ERR9027233 | Pre-XDR-TB | lineage3.1.2.1 | None | ERR8773517 | HR-TB | lineage4.4.1.1 | None | SRR1159738 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284906 | MDR-TB | lineage4.3.3 | None | ERR13267141 | MDR-TB | lineage2.2.1 | None | ERR5864582 | Pre-XDR-TB | lineage2.2.1 | None | ERR6359096 | MDR-TB | lineage4.6.1.2 | None | ERR9993060 | XDR-TB | lineage2.2.1 | None | SRR14801597 | Pre-XDR-TB | lineage2.2.1 | None | ERR6358958 | MDR-TB | lineage4.6.1.2 | None | SRR1159790 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119556 | Pre-XDR-TB | lineage4.6.2.2 | None | SRR10379895 | MDR-TB | lineage2.2.1 | None | ERR13284819 | MDR-TB | lineage4.8 | None | ERR7737880 | MDR-TB | lineage1.1.1.1 | None | ERR12328166 | HR-TB | lineage1.1.1;lineage2.2.1 | None | ERR11488395 | MDR-TB | lineage4.1.1.3 | None | SRR6831942 | MDR-TB | lineage2.2.1 | None | ERR13284388 | MDR-TB | lineage4.3.3 | None | ERR9907751 | Pre-XDR-TB | lineage4.1.1.1 | None | ERR9907726 | Pre-XDR-TB | lineage4.1.1.1 | None | ERR13258365 | MDR-TB | lineage2.2.1 | None | SRR25389551 | Pre-XDR-TB | lineage2.2.1 | None | ERR13297994 | MDR-TB | lineage2.2.2 | None | ERR11488922 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13285100 | MDR-TB | lineage4.3.3 | None | SRR29055608 | MDR-TB | lineage4.4.1.1 | None | ERR6359041 | MDR-TB | lineage4.6.1.2 | None | ERR9907775 | Pre-XDR-TB | lineage4.1.1.1 | None | SRR1162485 | MDR-TB | lineage2.2.1 | None | ERR13284097 | MDR-TB | lineage4.8 | None | SRR1049969 | Pre-XDR-TB | lineage4.1.3 | None | ERR11068914 | MDR-TB | lineage4.3.3 | None | SRR6257043 | MDR-TB | lineage2.2.1 | None | SRR1158950 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043817 | MDR-TB | lineage4.3.3 | None | SRR25207142 | Pre-XDR-TB | lineage2.2.1 | None | SRR10379974 | MDR-TB | lineage2.2.1 | None | SRR13232439 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284823 | MDR-TB | lineage2.2.1 | None | SRR5153617 | Pre-XDR-TB | lineage2.2.1 | None | SRR29289385 | XDR-TB | lineage3 | None | SRR25827868 | Pre-XDR-TB | lineage2.2.1;lineage3.1.2 | None | SRR11662589 | MDR-TB | lineage2.2.1 | None | SRR29230784 | MDR-TB | lineage4.6.1.2 | None | ERR11081389 | MDR-TB | lineage4.2.2.1 | None | SRR6964634 | MDR-TB | lineage3 | None | ERR11080966 | MDR-TB | lineage4.6.1.2 | None | SRR10430321 | MDR-TB | lineage4.3.3 | None | SRR29289251 | XDR-TB | lineage3 | None | ERR2307533 | MDR-TB | lineage2.2.1 | None | ERR2510477 | Pre-XDR-TB | lineage3 | pk | SRR14802066 | Pre-XDR-TB | lineage2.2.1 | None | ERR275198 | MDR-TB | lineage4.3.4.1 | pt | ERR13260431 | Other | lineage2.2.1 | None | ERR6359029 | MDR-TB | lineage4.6.1.2 | None | ERR13266440 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207136 | MDR-TB | lineage2.2.1 | None | SRR5486873 | MDR-TB | lineage4.8 | None | SRR24256059 | MDR-TB | lineage4.3.3 | None | SRR10828185 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800153 | Pre-XDR-TB | lineage3 | None | ERR4800090 | Pre-XDR-TB | lineage4.2.2 | in | ERR13273349 | MDR-TB | lineage4.3.4.2 | None | SRR15316305 | MDR-TB | lineage2.2.1 | None | ERR11081133 | Pre-XDR-TB | lineage4.3.3 | None | SRR11662211 | MDR-TB | lineage1.1.1 | None | ERR4822351 | MDR-TB | lineage2.2.1 | None | SRR1181247 | MDR-TB | lineage2.2.1 | None | SRR28646113 | MDR-TB | lineage4.1.2.1 | None | ERR9027231 | Pre-XDR-TB | lineage3.1.2.1 | None | SRR29093289 | MDR-TB | lineage4.2.2.2 | None | ERR6358715 | MDR-TB | lineage4.6.1.2 | None | ERR4800193 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800360 | Pre-XDR-TB | lineage2.2.1 | in | ERR13275993 | MDR-TB | lineage4.3.3 | None | ERR2653111 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4822380 | Pre-XDR-TB | lineage4.3.3 | kg | ERR5864581 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488748 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR8651658 | Pre-XDR-TB | lineage2.2.1 | cn | ERR9786768 | Other | lineage4.3.4.2 | None | ERR5866462 | MDR-TB | lineage2.2.1 | None | ERR4811111 | Pre-XDR-TB | lineage2.2.1 | cn | ERR718387 | MDR-TB | lineage1.2.1.2.1 | th | SRR20632794 | MDR-TB | lineage2.2.1.1 | None | ERR11798612 | MDR-TB | lineage2.2.1 | None | SRR20969933 | MDR-TB | lineage4.1.1.3 | None | SRR27069406 | Pre-XDR-TB | lineage4.4.2 | None | ERR3287855 | Pre-XDR-TB | lineage4.3.3 | pe | SRR28046348 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4822331 | MDR-TB | lineage4.3.3 | de | ERR11083065 | MDR-TB | lineage4.8 | None | ERR552424 | MDR-TB | lineage4.3.3 | None | ERR5864569 | MDR-TB | lineage2.2.1 | None | ERR10762247 | MDR-TB | lineage2.2.1 | None | SRR25206994 | Pre-XDR-TB | lineage2.2.1 | None | ERR11776027 | MDR-TB | lineage4.3.3 | None | SAMN02419602 | Pre-XDR-TB | lineage2.2.1 | by | SRR26936932 | MDR-TB | lineage2.2.1.1 | None | SRR26936929 | MDR-TB | lineage2.2.1 | None | SRR28351477 | Pre-XDR-TB | lineage2.2.1 | None | SRR1183663 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181007 | Pre-XDR-TB | lineage2.2.1 | None | SRR8847016 | MDR-TB | lineage2.2.1 | None | SRR5818577 | MDR-TB | lineage4.2.2.2 | dj | SRR15600349 | MDR-TB | lineage2.2.1.1 | None | ERR11488963 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11083066 | MDR-TB | lineage4.3.3 | None | ERR11488626 | MDR-TB | lineage4.3.3 | None | SRR24710152 | Pre-XDR-TB | lineage2.2.1 | None | SRR25207055 | XDR-TB | lineage2.2.1.1 | None | SRR5153235 | MDR-TB | lineage2.2.1 | None | ERR11798750 | MDR-TB | lineage4.2.1 | None | ERR5865731 | Pre-XDR-TB | lineage2.2.1 | None | SRR6257088 | MDR-TB | lineage2.2.1 | None | SRR5153834 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553891 | MDR-TB | lineage2.2.1 | None | SRR1184035 | Pre-XDR-TB | lineage2.2.1 | None | ERR11488730 | MDR-TB | lineage4.1.1.3 | None | ERR3148042 | MDR-TB | lineage4.1.2.1 | None | SRR5153622 | Pre-XDR-TB | lineage2.2.1 | None | ERR3639815 | MDR-TB | lineage4.8 | None | ERR5865950 | MDR-TB | lineage2.2.1 | None | ERR6359047 | MDR-TB | lineage4.6.1.2 | None | ERR5864576 | MDR-TB | lineage2.2.1 | None | SRR23310936 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082408 | MDR-TB | lineage4.3.3 | None | SRR1159362 | Pre-XDR-TB | lineage2.2.1 | None | ERR11798613 | MDR-TB | lineage2.2.1 | None | SRR16088066 | XDR-TB | lineage2.2.1 | None | ERR1654684 | MDR-TB | lineage4.6.1.2 | None | ERR4796730 | Pre-XDR-TB | lineage2.2.1 | in | SRR15276984 | XDR-TB | lineage3 | None | SRR25207181 | XDR-TB | lineage2.2.1.1 | None | ERR4829128 | MDR-TB | lineage3 | pk | SRR21277270 | MDR-TB | lineage4.4.2 | None | SRR6832495 | MDR-TB | lineage2.2.1 | None | SRR7517764 | MDR-TB | lineage4.3.3 | None | SRR24222955 | MDR-TB | lineage2.2.1 | None | SRR5152954 | MDR-TB | lineage2.2.1 | None | SRR14802140 | MDR-TB | lineage2.2.1 | None | ERR1227526 | MDR-TB | lineage4.3.4.1 | None | ERR11081175 | HR-TB | lineage2.2.1 | None | ERR11798546 | MDR-TB | lineage2.2.1 | None | SRR11662207 | MDR-TB | lineage2.2.1 | None | SRR24710273 | MDR-TB | lineage2.2.1 | None | SRR18714857 | MDR-TB | lineage2.2.1 | None | SRR24222954 | Pre-XDR-TB | lineage2.2.1 | None | SRR29016919 | MDR-TB | lineage2.2.1 | None | ERR4276857 | MDR-TB | lineage4.3.3 | None | ERR11044294 | MDR-TB | lineage1.2.1.2.1 | None | ERR5864571 | MDR-TB | lineage2.2.1 | None | SRR25207013 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082388 | MDR-TB | lineage4.8 | None | ERR13284199 | MDR-TB | lineage4.3.3 | None | ERR4553454 | MDR-TB | lineage3.1 | None | SRR21887756 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972341 | Pre-XDR-TB | lineage2.2.2 | None | ERR5864573 | MDR-TB | lineage2.2.1 | None | SRR29274024 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR11082636 | MDR-TB | lineage4.3.3 | None | SRR20632826 | Pre-XDR-TB | lineage2.2.1 | None | ERR9993163 | XDR-TB | lineage2.2.1 | None | ERR13284449 | MDR-TB | lineage4.6.1.2 | None | SRR9738552 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4796481 | Pre-XDR-TB | lineage2.2.1 | None | ERR6359040 | MDR-TB | lineage4.6.1.2 | None | SRR29230785 | MDR-TB | lineage4.3.4.1 | None | SRR23938665 | MDR-TB | lineage2.2.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR15316426 | MDR-TB | lineage2.2.1 | None | ERR13276146 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR24673550 | HR-TB | lineage2.2.1 | None | ERR13285122 | MDR-TB | lineage4.3.3 | None | SRR069943 | MDR-TB | lineage2.2.1.1 | None | ERR4553670 | MDR-TB | lineage4 | None | SRR18714811 | MDR-TB | lineage2.2.1 | None | ERR13260029 | MDR-TB | lineage4.2.2.2 | None | SRR11786874 | MDR-TB | lineage4.3.3 | None | SRR1181019 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284579 | MDR-TB | lineage4.2.2.1 | None | SRR998741 | MDR-TB | lineage4.1.3;lineage6.3.1 | None | SRR1002689 | MDR-TB | lineage2.2.1 | None | SRR29539559 | MDR-TB | lineage4.1.2;lineage4.3.3 | None | SRR1159122 | Pre-XDR-TB | lineage2.2.1 | None | ERR2307495 | MDR-TB | lineage2.2.1 | None | SRR12142388 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351390 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972386 | MDR-TB | lineage2.2.1 | None | SRR10305961 | MDR-TB | lineage2.2.1 | None | ERR11488857 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR28858731 | MDR-TB | lineage4.3.3 | None | ERR4011951 | MDR-TB | lineage4.2.2.2 | None | ERR13284847 | MDR-TB | lineage4.3.3 | None | ERR13284721 | MDR-TB | lineage4.3.3 | None | ERR5864570 | MDR-TB | lineage2.2.1 | None | ERR551477_ERR551478 | MDR-TB | lineage2.2.1 | None | SRR29231814 | MDR-TB | lineage4.6.1.2 | None | SRR1180984 | Pre-XDR-TB | lineage2.2.1 | None | SRR16186843 | HR-TB | lineage2.2.1 | None | SRR7517749 | RR-TB | lineage4.3.3 | None | SRR20139563 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR7645956 | Pre-XDR-TB | lineage2.2.1 | None | SRR29289352 | MDR-TB | lineage1.1.2 | None | SRR29289397 | XDR-TB | lineage3 | None | ERR2510699 | Pre-XDR-TB | lineage3 | pk | ERR13258488 | Pre-XDR-TB | lineage2.2.2 | None | SRR29289155 | XDR-TB | lineage3 | None | SRR29289157 | XDR-TB | lineage3 | None | SRR29289156 | XDR-TB | lineage3 | None | ERR2843540 | MDR-TB | lineage2.2.1 | None | ERR13276377 | MDR-TB | lineage4.3.3 | None | ERR13285087 | MDR-TB | lineage4.3.3 | None | ERR13267096 | Pre-XDR-TB | lineage4.2.2 | None | ERR4796383 | Pre-XDR-TB | lineage2.2.1 | in | SRR15276986 | XDR-TB | lineage3 | None | ERR5864572 | MDR-TB | lineage2.2.1 | None | SRR15276987 | XDR-TB | lineage3 | None | ERR551477 | MDR-TB | lineage2.2.1 | None | ERR5864584 | MDR-TB | lineage2.2.1 | None | ERR5865732 | Pre-XDR-TB | lineage2.2.1 | None | ERR6358870 | RR-TB | lineage4.6.1.1 | None | ERR4797738 | Pre-XDR-TB | lineage4.3.3 | in | ERR13285093 | MDR-TB | lineage4.1.2.1 | None | ERR4800205 | Pre-XDR-TB | lineage4.3.3 | in | ERR4800221 | HR-TB | lineage1.1.2;lineage2.2.1 | in | SRR12420707 | MDR-TB | lineage4.5 | None | ERR5864579 | MDR-TB | lineage2.2.1 | None | ERR7737947 | MDR-TB | lineage4.2.2.2 | None | SRR11662159 | MDR-TB | lineage2.2.1 | None | ERR4799246 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798269 | Pre-XDR-TB | lineage2.2.1 | in | ERR11081600 | MDR-TB | lineage2.2.1 | None | ERR4798568 | Pre-XDR-TB | lineage4.2.2 | in | SRR18714993 | MDR-TB | lineage4.3.3 | None | SRR29273831 | MDR-TB | lineage4.1.2.1 | None | DRR130080 | Pre-XDR-TB | lineage2.2.2 | None | ERR4796771 | Pre-XDR-TB | lineage2.2.1 | in | SRR25206920 | MDR-TB | lineage2.2.2 | None | ERR6359100 | MDR-TB | lineage4.6.1.2 | None | ERR13284429 | MDR-TB | lineage2.2.1 | None | SRR671855 | Pre-XDR-TB | lineage2.2.2 | cn | SRR671749 | MDR-TB | lineage4.4.2 | cn | ERR552426 | MDR-TB | lineage4.3.3 | None | ERR760879 | MDR-TB | lineage4.1.2.1.1 | ar | SRR22175205 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR11241400 | Pre-XDR-TB | lineage4.3.3 | None | SRR25827565 | Pre-XDR-TB | lineage1.2.2.2;lineage2.2.1 | None | ERR8665944 | Pre-XDR-TB | lineage2.2.1 | None | ERR4822598 | MDR-TB | lineage4.3.3 | de | ERR4822311 | MDR-TB | lineage4.3.3 | None | ERR4828900 | MDR-TB | lineage4.1.2.1 | None | ERR4828817 | MDR-TB | lineage2.2.1 | None | SRR9588027 | MDR-TB | lineage4.4.1.1 | None | ERR4423539 | HR-TB | lineage4.1.3 | None | ERR1679586 | MDR-TB | lineage4.1.3 | ng | SRR998744 | MDR-TB | lineage4.1.3 | None | ERR2707095 | MDR-TB | lineage4.6.1.2 | cd | ERR2707076 | MDR-TB | lineage4.6.1.2 | cd | ERR2707091 | MDR-TB | lineage4.6.1.2 | cd | ERR7911388 | Pre-XDR-TB | lineage2.2.1 | us | ERR2707230 | MDR-TB | lineage4.3.4.1 | cd | SRR11662673 | MDR-TB | lineage2.2.1 | None | ERR4830649 | MDR-TB | lineage2.2.1 | None | ERR2707077 | MDR-TB | lineage4.6.1.2 | cd | ERR4828411 | MDR-TB | lineage2.2.1 | vn | ERR502959 | RR-TB | lineage4.4.2 | None | ERR4813445 | Pre-XDR-TB | lineage4.3.3 | None | ERR7911738 | MDR-TB | lineage2.2.1 | us | ERR4831447 | Pre-XDR-TB | lineage3 | None | SRR29681228 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR8665578 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665902 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665945 | Pre-XDR-TB | lineage2.2.1 | None | ERR2653179 | MDR-TB | lineage4.1.2.1 | None | ERR4800161 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR25827651 | MDR-TB | lineage2.2.1.1 | None | ERR403301 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864563 | MDR-TB | lineage2.2.1 | None | ERR1193898 | MDR-TB | lineage4.3.2.1 | sz | ERR067709 | MDR-TB | lineage2.2.1 | ru | ERR067622 | MDR-TB | lineage2.2.1 | ru | ERR133919 | MDR-TB | lineage2.2.1 | ru | ERR144636 | Pre-XDR-TB | lineage2.2.1 | ru | ERR751313 | MDR-TB | lineage5.1.1 | gh | ERR2516890 | MDR-TB | lineage3 | gb | ERR2516419 | MDR-TB | lineage4.3.3 | nl | ERR2516459 | MDR-TB | lineage2.2.1 | nl | SRR5709935 | Pre-XDR-TB | lineage2.2.1 | th | SRR5709921 | MDR-TB | lineage2.2.1 | th | ERR553350 | MDR-TB | lineage4.3.2.1 | sz | ERR551014 | MDR-TB | lineage4.4.1.1 | sz | SRR5817472 | Pre-XDR-TB | lineage2.2.1 | au | SRR5341316 | XDR-TB | lineage2.2.1 | in | SRR5341353 | XDR-TB | lineage2.2.1 | in | SRR6824347 | RR-TB | lineage4.4.2 | cn | SRR6824286 | Pre-XDR-TB | lineage2.2.1 | cn | ERR2307611 | MDR-TB | lineage2.2.1 | None | SRR28706437 | HR-TB | lineage4.3.3 | None | SRR1162498 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045921 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR28394217 | Pre-XDR-TB | lineage4.1.1 | None | SRR28240056 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762236 | MDR-TB | lineage2.2.1 | None | SRR28393943 | MDR-TB | lineage4.3.3 | None | ERR4830980 | MDR-TB | lineage3.1.2.1 | np | SRR25207252 | MDR-TB | lineage2.2.1 | None | SRR25827635 | Pre-XDR-TB | lineage2.2.1.1;lineage3 | None | ERR4831947 | MDR-TB | lineage2.2.1 | vn | ERR4831938 | MDR-TB | lineage2.2.1 | None | SRR7516317 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830834 | MDR-TB | lineage4.2.2.2 | None | ERR5866262 | MDR-TB | lineage2.2.1 | None | ERR6358847 | MDR-TB | lineage4.6.1.1 | None | ERR6358943 | MDR-TB | lineage4.6.1.2 | None | ERR6359068 | MDR-TB | lineage4.6.1.2 | None | ERR8773999 | HR-TB | lineage2.2.1 | None | SRR1184123 | Pre-XDR-TB | lineage2.2.1 | None | SRR6356996 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827530 | XDR-TB | lineage2.2.1;lineage4 | None | SRR28706385 | MDR-TB | lineage4.3.3 | None | ERR2307528 | MDR-TB | lineage2.2.1 | None | SRR11972316 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR998774 | Pre-XDR-TB | lineage4.1.3 | None | ERR11081117 | MDR-TB | lineage4.3.3 | None | SRR1181045 | MDR-TB | lineage2.2.1 | None | SRR13232401 | MDR-TB | lineage4.3.3 | None | SAMEA2533971 | MDR-TB | lineage2.2.1 | uz | ERR553238 | MDR-TB | lineage2.2.1 | de | ERR2514633 | MDR-TB | lineage4.3.4.1 | gb | SRR6824312 | MDR-TB | lineage2.2.1 | cn | SRR15600382 | MDR-TB | lineage2.2.1.1 | None | ERR11081111 | MDR-TB | lineage4.8 | None | SRR24710147 | Pre-XDR-TB | lineage4.3.3 | None | SRR25207138 | MDR-TB | lineage2.2.1 | None | ERR13266719 | Pre-XDR-TB | lineage4.2.2 | None | SRR28393917 | MDR-TB | lineage4.3.3 | None | SRR28706489 | MDR-TB | lineage4.3.3 | None | ERR11488787 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR11081209 | MDR-TB | lineage4.3.3 | None | ERR4813208 | Pre-XDR-TB | lineage4.3.3 | pe | SRR671826 | Pre-XDR-TB | lineage2.2.1 | cn | ERR5864574 | MDR-TB | lineage2.2.1 | None | SRR28394214 | MDR-TB | lineage4.3.3 | None | ERR4831607 | MDR-TB | lineage2.2.1 | vn | ERR4830760 | MDR-TB | lineage3 | ir | ERR4830780 | MDR-TB | lineage4.3.3 | ir | ERR11081319 | MDR-TB | lineage4.3.3 | None | ERR4831973 | MDR-TB | lineage2.2.1 | vn | ERR10610098 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662697 | Pre-XDR-TB | lineage2.2.1.1;lineage4.2.2 | None | SRR15276985 | Pre-XDR-TB | lineage3 | None | SRR3085331 | MDR-TB | lineage4.2.2.2 | None | SRR6807685 | MDR-TB | lineage2.2.1 | None | SRR6832792 | Sensitive | lineage4.3.3 | None | ERR4553448 | MDR-TB | lineage4 | None | ERR8773735 | HR-TB | lineage2.2.1 | None | SRR13243562 | Pre-XDR-TB | lineage2.2.1 | None | ERR1199110 | MDR-TB | lineage4.6.1.2 | cd | ERR067599 | MDR-TB | lineage4.3.3 | ru | ERR1215480 | MDR-TB | lineage5.1.5 | gh | ERR1215474 | MDR-TB | lineage5.1.1 | gh | ERR2677404 | MDR-TB | lineage4.3.3 | de | ERR2516827 | MDR-TB | lineage3;lineage4 | gb | ERR108490 | Sensitive | lineage2.2.1 | ru | SRR3082073 | MDR-TB | lineage4.2.2.2 | None | SRR25827736 | XDR-TB | lineage3 | None | ERR1035204 | MDR-TB | lineage4.3.4.1 | pt | ERR4872154 | Pre-XDR-TB | lineage4.6.2.2 | None | ERR13245253 | XDR-TB | lineage2.2.1 | None | ERR13284492 | MDR-TB | lineage2.2.1 | None | SRR998747 | MDR-TB | lineage4.1.3 | None | ERR11043624 | MDR-TB | lineage4.3.3 | None | ERR5864565 | MDR-TB | lineage2.2.1 | None | ERR11081570 | Pre-XDR-TB | lineage4.3.3 | None |
|---|
