Run ID: ERR6866918
Sample name:
Date: 02-04-2023 03:41:53
Number of reads: 1964432
Percentage reads mapped: 99.47
Strain: lineage4.1.2
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 764263 | c.894G>A | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472597 | n.752G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472607 | n.762G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472655 | n.810G>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472673 | n.828T>G | non_coding_transcript_exon_variant | 0.12 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169031 | p.Asp528Asn | missense_variant | 0.2 |
PPE35 | 2169041 | c.1572G>A | synonymous_variant | 0.44 |
PPE35 | 2169044 | c.1569G>C | synonymous_variant | 0.45 |
PPE35 | 2169047 | p.Ile522Val | missense_variant | 0.45 |
PPE35 | 2169053 | c.1560T>C | synonymous_variant | 1.0 |
PPE35 | 2169056 | c.1557A>G | synonymous_variant | 0.45 |
PPE35 | 2169059 | c.1554G>A | synonymous_variant | 0.55 |
PPE35 | 2169063 | p.Met517Thr | missense_variant | 1.0 |
PPE35 | 2169065 | p.Ala516Ile | missense_variant | 0.55 |
PPE35 | 2169068 | c.1545G>T | synonymous_variant | 0.55 |
PPE35 | 2169071 | c.1542A>G | synonymous_variant | 0.42 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
kasA | 2519143 | c.1029G>A | synonymous_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4244293 | p.Leu354Pro | missense_variant | 1.0 |
embB | 4248705 | p.Pro731Leu | missense_variant | 1.0 |
aftB | 4267547 | c.1290C>T | synonymous_variant | 1.0 |
aftB | 4268333 | c.504C>T | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |