Run ID: ERR7764342
Sample name:
Date: 02-04-2023 05:44:08
Number of reads: 2053604
Percentage reads mapped: 99.47
Strain: lineage4.3.4.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.4 | Euro-American (LAM) | LAM | RD174 | 0.99 |
lineage4.3.4.2 | Euro-American (LAM) | LAM1;LAM4;LAM11 | RD174 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5511 | p.Ser91Cys | missense_variant | 1.0 |
gyrA | 6817 | c.-485G>A | upstream_gene_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.32 |
mshA | 576456 | p.Val370Gly | missense_variant | 0.33 |
mshA | 576489 | p.Val381Gly | missense_variant | 0.32 |
mshA | 576616 | c.1269G>C | synonymous_variant | 0.27 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.21 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087816 | p.Cys333Gly | missense_variant | 0.22 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 1.0 |
fbiD | 3339744 | c.627A>C | synonymous_variant | 1.0 |
fbiD | 3339746 | p.Ala210Gly | missense_variant | 1.0 |
fbiD | 3339749 | p.Val211Gly | missense_variant | 0.67 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568425 | c.255T>G | synonymous_variant | 0.5 |
Rv3236c | 3612009 | p.Ala370Thr | missense_variant | 1.0 |
alr | 3840299 | c.1122C>G | synonymous_variant | 1.0 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
embC | 4239763 | c.-100C>T | upstream_gene_variant | 1.0 |
embC | 4242331 | p.Glu823Asp | missense_variant | 0.22 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243682 | c.450T>G | synonymous_variant | 0.15 |
embA | 4245835 | p.Leu868Arg | missense_variant | 0.35 |
embA | 4245838 | p.Val869Gly | missense_variant | 0.29 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.43 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.13 |
embB | 4247033 | p.Ser174Arg | missense_variant | 0.25 |
embB | 4248328 | c.1815G>C | synonymous_variant | 0.21 |
whiB6 | 4338200 | p.Asp108His | missense_variant | 0.24 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |