TB-Profiler result

Run: ERR987697
Summary

Run ID: ERR987697

Sample name:

Date: 02-04-2023 13:20:50

Number of reads: 3501627

Percentage reads mapped: 99.64

Strain: lineage4.6.1.2;lineage4.6.1.1

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.6 Euro-American T;LAM None 1.0
lineage4.6.1 Euro-American (Uganda) T2 RD724 1.0
lineage4.6.1.2 Euro-American T2 RD724 0.19
lineage4.6.1.1 Euro-American T2-Uganda RD724 0.82
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7539 p.Thr80Ala missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 9304 p.Gly668Asp missense_variant 1.0
mmpL5 775639 p.Ile948Val missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
embR 1416410 p.Leu313Arg missense_variant 0.16
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2101786 c.1257G>A synonymous_variant 0.31
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pepQ 2860496 c.-78C>G upstream_gene_variant 0.2
Rv2752c 3065050 p.Leu381Arg missense_variant 0.78
Rv2752c 3065954 p.Thr80Ala missense_variant 0.2
thyX 3067801 p.Lys49Glu missense_variant 0.14
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
whiB7 3568579 p.Ala34Val missense_variant 0.12
embA 4242643 c.-590C>T upstream_gene_variant 1.0
embA 4245055 p.Thr608Asn missense_variant 0.26
ethA 4328329 c.-856C>G upstream_gene_variant 0.77
whiB6 4338440 c.81dupT frameshift_variant 0.76
whiB6 4338595 c.-75delG upstream_gene_variant 1.0