Run ID: SRR10380221
Sample name:
Date: 02-04-2023 17:31:02
Number of reads: 4228367
Percentage reads mapped: 99.63
Strain: lineage4.8;lineage4.2.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.2 | Euro-American | H;T;LAM | None | 0.35 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 0.65 |
lineage4.2.1 | Euro-American (TUR) | H3;H4 | None | 0.35 |
lineage4.2.1.1 | Euro-American (TUR) | H3;H4 | None | 0.36 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 0.41 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 0.43 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.24 |
rpoB | 760103 | c.297G>A | synonymous_variant | 0.63 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777451 | p.Val344Leu | missense_variant | 0.37 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 0.61 |
rrl | 1474934 | n.1277C>G | non_coding_transcript_exon_variant | 0.63 |
fabG1 | 1673154 | c.-286A>C | upstream_gene_variant | 0.62 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168149 | p.Pro822Ser | missense_variant | 0.63 |
PPE35 | 2169879 | p.Phe245Cys | missense_variant | 0.27 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518168 | c.54C>T | synonymous_variant | 0.62 |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 0.39 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 0.4 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.45 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 0.37 |
rpoA | 3878613 | c.-106A>C | upstream_gene_variant | 0.22 |
rpoA | 3878637 | c.-130G>C | upstream_gene_variant | 0.35 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.18 |
ddn | 3987092 | p.Glu83Asp | missense_variant | 0.32 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
aftB | 4268450 | c.387A>G | synonymous_variant | 0.62 |
ubiA | 4269864 | c.-31C>T | upstream_gene_variant | 0.62 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408213 | c.-11C>T | upstream_gene_variant | 0.42 |