Run ID: SRR1175073
Sample name:
Date: 03-04-2023 03:37:15
Number of reads: 23264
Percentage reads mapped: 2.58
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 1.0 | streptomycin |
ethA | 4326333 | p.Ala381Pro | missense_variant | 1.0 | ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
fbiC | 1304952 | p.Asp674Glu | missense_variant | 0.5 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.87 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.82 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 1.0 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.88 |
rrl | 1474839 | n.1182C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474844 | n.1187G>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474848 | n.1191G>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474862 | n.1205C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474869 | n.1212G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475783 | n.2126T>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475858 | n.2201T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475866 | n.2209T>A | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475874 | n.2217C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.9 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.91 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.92 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.93 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.94 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.95 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.96 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476514 | n.2857C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476519 | n.2862C>G | non_coding_transcript_exon_variant | 1.0 |
Rv3083 | 3449194 | p.Gly231Ser | missense_variant | 0.67 |
Rv3083 | 3449197 | p.Arg232Ser | missense_variant | 0.67 |
Rv3083 | 3449205 | c.702G>T | synonymous_variant | 0.67 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |