Run ID: SRR12634543
Sample name:
Date: 03-04-2023 06:53:09
Number of reads: 1967294
Percentage reads mapped: 63.46
Strain: lineage4.8
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.8 | Euro-American (mainly T) | T1;T2;T3;T5 | RD219 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472147 | n.302G>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472153 | n.308G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472541 | n.696T>G | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472553 | n.708C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472572 | n.727T>C | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472574 | n.729T>C | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472579 | n.734G>A | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472582 | n.737G>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472583 | n.738T>A | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472584 | n.739A>G | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472594 | n.749G>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472598 | n.753A>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.32 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.24 |
rrs | 1472658 | n.813G>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472659 | n.814G>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472660 | n.815T>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472664 | n.819A>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472666 | n.821_822insAGGT | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472686 | n.842_844delATC | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472707 | n.862A>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472714 | n.869A>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472715 | n.870C>G | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472716 | n.871C>A | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472754 | n.909G>T | non_coding_transcript_exon_variant | 0.26 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472912 | n.1067C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472917 | n.1072G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473202 | n.1357C>T | non_coding_transcript_exon_variant | 0.13 |
rrs | 1473206 | n.1361G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475791 | n.2134A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475803 | n.2146T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475804 | n.2147G>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475816 | n.2159C>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475817 | n.2160A>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475874 | n.2217C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.49 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.49 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.48 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2103202 | c.-160C>A | upstream_gene_variant | 1.0 |
PPE35 | 2168149 | p.Pro822Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv3083 | 3448497 | c.-7T>A | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4247395 | c.882C>T | synonymous_variant | 1.0 |
whiB6 | 4338290 | c.231delA | frameshift_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
Rv3083 | 3448507 | c.5_*1408del | frameshift_variant&stop_lost&splice_region_variant | 1.0 |