Run ID: SRR13180283
Sample name:
Date: 03-04-2023 08:17:00
Number of reads: 851874
Percentage reads mapped: 82.01
Strain: lineage4.1.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
lineage4.1.2.1 | Euro-American (Haarlem) | T1;H1 | RD182 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575679 | p.Asn111Ser | missense_variant | 1.0 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472191 | n.346G>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472240 | n.395G>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472242 | n.397C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472251 | n.406G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472253 | n.408G>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472259 | n.414C>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472266 | n.421C>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472734 | n.889C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472741 | n.896G>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472793 | n.948A>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472803 | n.958T>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472812 | n.967A>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473159 | n.1314C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474328 | n.671T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475434 | n.1777G>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475785 | n.2128A>C | non_coding_transcript_exon_variant | 0.15 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2155564 | p.Phe183Ser | missense_variant | 1.0 |
PPE35 | 2169783 | p.Thr277Lys | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
clpC1 | 4040894 | c.-258_-191delCAGGCGAAAGCCTGGGCGCCGGTACTTTGCCGCGTTCGCTGGCGGCGAACCGATGGCCGCTCGGCGCC | upstream_gene_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4246184 | c.-330A>G | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |