Run ID: SRR13861185
Sample name:
Date: 03-04-2023 09:25:29
Number of reads: 1743966
Percentage reads mapped: 43.64
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
ethA | 4327340 | p.Trp45* | stop_gained | 1.0 | ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 8646 | p.Gln449Lys | missense_variant | 1.0 |
gyrA | 9138 | p.Gln613Lys | missense_variant | 1.0 |
gyrA | 9604 | p.Val768Ala | missense_variant | 1.0 |
ccsA | 620748 | c.858T>G | synonymous_variant | 1.0 |
rpoB | 761853 | p.Ile683Val | missense_variant | 1.0 |
mmpL5 | 777509 | c.972G>T | synonymous_variant | 1.0 |
mmpS5 | 779508 | c.-603G>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406904 | c.436dupT | frameshift_variant | 1.0 |
Rv1258c | 1407127 | p.Arg72Ser | missense_variant | 0.98 |
rrs | 1472973 | n.1128A>G | non_coding_transcript_exon_variant | 1.0 |
inhA | 1674552 | c.351C>G | synonymous_variant | 1.0 |
rpsA | 1834079 | p.Arg180Cys | missense_variant | 1.0 |
PPE35 | 2168448 | p.Gln722Pro | missense_variant | 1.0 |
Rv1979c | 2221876 | p.Val430Glu | missense_variant | 1.0 |
kasA | 2518036 | c.-78delG | upstream_gene_variant | 1.0 |
kasA | 2518088 | c.-27T>A | upstream_gene_variant | 1.0 |
eis | 2714449 | p.Trp295Ser | missense_variant | 1.0 |
eis | 2714773 | p.Pro187Gln | missense_variant | 1.0 |
eis | 2715525 | c.-193G>T | upstream_gene_variant | 1.0 |
ahpC | 2726611 | c.419_420insA | frameshift_variant | 1.0 |
folC | 2747455 | c.144C>A | synonymous_variant | 1.0 |
pepQ | 2859723 | c.696T>C | synonymous_variant | 1.0 |
ribD | 2987540 | c.702G>T | synonymous_variant | 1.0 |
fbiD | 3339321 | c.204G>A | synonymous_variant | 1.0 |
fprA | 3474339 | p.Met111Ile | missense_variant | 1.0 |
fprA | 3474353 | c.348delT | frameshift_variant | 1.0 |
clpC1 | 4038436 | p.Ala757Ser | missense_variant | 1.0 |
embC | 4242635 | p.Ala925Ser | missense_variant | 1.0 |
embB | 4249145 | c.2634delC | frameshift_variant | 1.0 |
ubiA | 4269803 | p.Ala11Pro | missense_variant | 1.0 |
ethA | 4326689 | p.Lys262Thr | missense_variant | 1.0 |
ethA | 4326849 | p.Pro209Thr | missense_variant | 1.0 |