Run ID: SRR13861215
Sample name:
Date: 03-04-2023 09:26:27
Number of reads: 3885726
Percentage reads mapped: 64.83
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5709 | p.Gly157Val | missense_variant | 1.0 |
gyrA | 9028 | p.Val576Ala | missense_variant | 1.0 |
rpoB | 762011 | c.2205G>C | synonymous_variant | 1.0 |
rpoB | 762279 | c.2474delA | frameshift_variant | 1.0 |
mmpS5 | 778823 | p.Ile28Thr | missense_variant | 1.0 |
fbiC | 1304640 | c.1710A>C | synonymous_variant | 1.0 |
Rv1258c | 1406376 | p.Gly322Val | missense_variant | 1.0 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.26 |
PPE35 | 2169882 | p.Ser244Ile | missense_variant | 1.0 |
eis | 2714940 | c.392delA | frameshift_variant | 1.0 |
ald | 3087311 | c.492C>G | synonymous_variant | 0.99 |
fbiB | 3642465 | p.Asp311His | missense_variant | 1.0 |
alr | 3840300 | p.Pro374His | missense_variant | 1.0 |
rpoA | 3878288 | p.Thr74Pro | missense_variant | 1.0 |
clpC1 | 4039415 | c.1289dupA | frameshift_variant | 1.0 |
clpC1 | 4040792 | c.-88A>T | upstream_gene_variant | 1.0 |
embA | 4243235 | c.3G>T | synonymous_variant | 1.0 |