TB-Profiler result

Run: SRR13861261
Summary

Run ID: SRR13861261

Sample name:

Date: 03-04-2023 09:27:28

Number of reads: 667954

Percentage reads mapped: 33.43

Strain: lineage4.9

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6214 c.975G>C synonymous_variant 0.17
gyrB 6217 c.978G>C synonymous_variant 0.17
gyrB 6223 c.984G>C synonymous_variant 0.18
gyrA 6778 c.-524C>T upstream_gene_variant 0.14
gyrA 7469 c.168C>T synonymous_variant 0.13
gyrA 7480 p.Phe60Tyr missense_variant 0.13
gyrA 7490 c.189C>T synonymous_variant 0.14
gyrA 8156 c.855T>C synonymous_variant 0.19
gyrA 8168 c.867A>G synonymous_variant 0.19
gyrA 8174 c.873C>G synonymous_variant 0.18
gyrA 8177 c.876A>C synonymous_variant 0.21
gyrA 8198 c.897T>C synonymous_variant 0.3
gyrA 8204 c.903C>T synonymous_variant 0.26
gyrA 8207 c.906T>C synonymous_variant 0.26
gyrA 8216 c.915G>A synonymous_variant 0.24
gyrA 8219 c.918T>C synonymous_variant 0.24
gyrA 8225 c.924T>C synonymous_variant 0.25
gyrA 8234 c.933T>G synonymous_variant 0.24
gyrA 8235 c.934_936delTTAinsCTG synonymous_variant 0.24
gyrA 8253 p.Ile318Leu missense_variant 0.23
gyrA 8264 c.963T>C synonymous_variant 0.24
gyrA 8267 c.966G>C synonymous_variant 0.24
gyrA 8270 c.969G>C synonymous_variant 0.24
gyrA 8283 p.Ile328Leu missense_variant 0.21
gyrA 8288 c.987T>C synonymous_variant 0.21
gyrA 8294 c.993T>C synonymous_variant 0.25
gyrA 8324 c.1023T>C synonymous_variant 0.24
gyrA 8339 c.1038A>G synonymous_variant 0.22
gyrA 8342 c.1041G>C synonymous_variant 0.21
gyrA 8366 c.1065G>C synonymous_variant 0.25
gyrA 8375 c.1074G>C synonymous_variant 0.24
gyrA 8391 p.Tyr364His missense_variant 0.27
gyrA 8399 c.1098T>C synonymous_variant 0.29
gyrA 8420 c.1119T>C synonymous_variant 0.26
gyrA 8423 c.1122G>C synonymous_variant 0.26
gyrA 8442 c.1141C>T synonymous_variant 0.23
gyrA 8453 c.1152A>C synonymous_variant 0.22
gyrA 8462 c.1161A>G synonymous_variant 0.23
gyrA 8471 c.1170T>C synonymous_variant 0.2
gyrA 8480 c.1179C>T synonymous_variant 0.17
gyrA 8489 c.1188A>G synonymous_variant 0.14
gyrA 8498 c.1197C>T synonymous_variant 0.13
gyrA 8619 c.1318T>C synonymous_variant 0.21
gyrA 8624 c.1323G>C synonymous_variant 0.23
gyrA 8627 c.1326C>G synonymous_variant 0.23
gyrA 8636 c.1335A>G synonymous_variant 0.24
gyrA 8642 c.1341A>G synonymous_variant 0.24
gyrA 8645 c.1344C>G synonymous_variant 0.25
gyrA 8672 c.1371A>G synonymous_variant 0.17
gyrA 8693 c.1392T>C synonymous_variant 0.21
gyrA 8699 c.1398A>G synonymous_variant 0.2
gyrA 8711 c.1410A>C synonymous_variant 0.23
gyrA 8714 c.1413A>G synonymous_variant 0.22
gyrA 8717 c.1416C>G synonymous_variant 0.22
gyrA 8720 c.1419G>A synonymous_variant 0.23
gyrA 8729 c.1428T>C synonymous_variant 0.24
gyrA 8732 c.1431G>C synonymous_variant 0.22
gyrA 8747 c.1446A>G synonymous_variant 0.23
gyrA 8756 c.1455A>G synonymous_variant 0.19
gyrA 8786 c.1485T>C synonymous_variant 0.2
gyrA 8796 p.Ile499Val missense_variant 0.19
gyrA 8801 c.1500G>C synonymous_variant 0.19
gyrA 8810 c.1509A>C synonymous_variant 0.18
gyrA 8816 c.1515C>T synonymous_variant 0.18
gyrA 8829 c.1528T>C synonymous_variant 0.17
gyrA 8837 c.1536C>T synonymous_variant 0.16
gyrA 8858 c.1557T>C synonymous_variant 0.17
gyrA 8867 c.1566A>G synonymous_variant 0.16
gyrA 8870 c.1569G>C synonymous_variant 0.15
ccsA 620331 c.441C>T synonymous_variant 0.15
ccsA 620362 p.Ala158Thr missense_variant 0.12
ccsA 620367 c.477T>C synonymous_variant 0.13
rpoB 760361 c.555T>C synonymous_variant 0.14
rpoB 760406 c.600G>C synonymous_variant 0.17
rpoB 760418 c.612G>C synonymous_variant 0.18
rpoB 760424 c.618C>G synonymous_variant 0.18
rpoB 760430 c.624T>C synonymous_variant 0.16
rpoB 760475 c.669A>G synonymous_variant 0.16
rpoB 760481 c.675G>C synonymous_variant 0.18
rpoB 760484 c.678A>G synonymous_variant 0.18
rpoB 760514 c.708C>T synonymous_variant 0.18
rpoB 760522 p.Ser239Asn missense_variant 0.19
rpoB 761636 c.1830G>T synonymous_variant 0.18
rpoB 761645 c.1839C>G synonymous_variant 0.14
rpoB 761648 c.1842T>C synonymous_variant 0.14
rpoB 761687 c.1881C>T synonymous_variant 0.12
rpoB 761735 c.1929C>G synonymous_variant 0.14
rpoB 761747 c.1941G>C synonymous_variant 0.16
rpoB 761750 c.1944G>C synonymous_variant 0.15
rpoB 761765 c.1959T>C synonymous_variant 0.14
rpoB 761847 p.Cys681Ser missense_variant 0.12
rpoC 762698 c.-672C>T upstream_gene_variant 1.0
rpoB 762958 p.Leu1051Pro missense_variant 0.87
rpoC 762989 c.-381G>C upstream_gene_variant 0.14
rpoC 763040 c.-330C>G upstream_gene_variant 0.16
rpoC 763070 c.-300T>C upstream_gene_variant 0.17
rpoC 763076 c.-294C>G upstream_gene_variant 0.18
rpoC 763085 c.-285C>G upstream_gene_variant 0.19
rpoC 763528 c.159G>A synonymous_variant 0.15
rpoC 763546 c.177A>G synonymous_variant 0.14
rpoC 763933 c.564C>T synonymous_variant 0.19
rpoC 763945 c.576T>C synonymous_variant 0.24
rpoC 763960 c.591T>C synonymous_variant 0.26
rpoC 763967 p.Gly200Ser missense_variant 0.25
rpoC 763978 c.609C>G synonymous_variant 0.27
rpoC 763996 c.627T>C synonymous_variant 0.28
rpoC 764005 c.636G>C synonymous_variant 0.28
rpoC 764011 c.642T>C synonymous_variant 0.27
rpoC 764024 c.655T>C synonymous_variant 0.24
rpoC 764040 p.Ser224Asn missense_variant 0.32
rpoC 764044 c.675T>C synonymous_variant 0.32
rpoC 764059 c.690G>C synonymous_variant 0.25
rpoC 764083 c.714A>G synonymous_variant 0.2
rpoC 764098 c.729A>G synonymous_variant 0.17
rpoC 764101 c.732C>G synonymous_variant 0.16
rpoC 764257 c.888G>C synonymous_variant 0.15
rpoC 764266 c.897T>C synonymous_variant 0.15
rpoC 764269 c.900G>C synonymous_variant 0.15
rpoC 764282 p.Ser305Thr missense_variant 0.15
rpoC 764320 c.951C>G synonymous_variant 0.14
rpoC 764365 c.996C>T synonymous_variant 0.16
rpoC 764381 p.Ser338Thr missense_variant 0.12
rpoC 764405 c.1036A>C synonymous_variant 0.27
rpoC 764431 c.1062G>C synonymous_variant 0.17
rpoC 764434 c.1065A>G synonymous_variant 0.3
rpoC 764441 p.Ile358Leu missense_variant 0.15
rpoC 764446 c.1077T>C synonymous_variant 0.35
rpoC 764449 c.1080G>C synonymous_variant 0.19
rpoC 764451 p.Gly361Ala missense_variant 0.14
rpoC 764455 c.1086G>C synonymous_variant 0.22
rpoC 764458 c.1089G>C synonymous_variant 0.15
rpoC 764461 c.1092A>G synonymous_variant 0.18
rpoC 764472 p.Asn368Ser missense_variant 0.14
rpoC 764479 c.1110G>A synonymous_variant 0.15
rpoC 764485 c.1116G>C synonymous_variant 0.15
rpoC 764497 c.1128A>G synonymous_variant 0.16
rpoC 764498 p.Ser377Ala missense_variant 0.16
rpoC 764503 c.1134G>C synonymous_variant 0.15
rpoC 764509 c.1140G>C synonymous_variant 0.15
rpoC 764513 p.Phe382Leu missense_variant 0.15
rpoC 764521 c.1152T>C synonymous_variant 0.24
rpoC 764527 c.1158C>T synonymous_variant 0.13
rpoC 764566 c.1197C>G synonymous_variant 0.13
rpoC 764893 c.1524T>C synonymous_variant 0.15
rpoC 764911 c.1542A>G synonymous_variant 0.15
rpoC 765421 c.2052C>G synonymous_variant 0.13
rpoC 765451 c.2082C>G synonymous_variant 0.14
rpoC 765454 c.2085C>G synonymous_variant 0.13
rpoC 765541 c.2172C>G synonymous_variant 0.19
rpoC 765553 c.2184C>T synonymous_variant 0.19
rpoC 765556 c.2187G>C synonymous_variant 0.19
rpoC 765559 c.2190G>C synonymous_variant 0.24
rpoC 765578 c.2209C>T synonymous_variant 0.17
rpoC 765583 c.2214G>T synonymous_variant 0.12
rpoC 765613 p.His748Gln missense_variant 0.16
rpoC 765625 c.2256C>G synonymous_variant 0.15
rpoC 765628 c.2259G>C synonymous_variant 0.15
rpoC 765631 p.Asp754Glu missense_variant 0.16
rpoC 765658 c.2289C>T synonymous_variant 0.17
rpoC 765700 c.2331T>C synonymous_variant 0.15
rpoC 767158 c.3789T>C synonymous_variant 0.15
rpoC 767167 c.3798C>G synonymous_variant 0.14
mmpL5 776000 p.Leu827Ile missense_variant 0.18
rplC 801267 c.459A>C synonymous_variant 0.2
rplC 801270 c.462T>C synonymous_variant 0.2
rplC 801276 c.468G>C synonymous_variant 0.19
rplC 801279 c.471G>C synonymous_variant 0.13
rplC 801282 c.474G>C synonymous_variant 0.12
rplC 801301 c.493C>A synonymous_variant 0.13
rplC 801312 c.504G>C synonymous_variant 0.12
rplC 801357 c.549T>C synonymous_variant 0.13
fbiC 1302962 p.Ala11Gly missense_variant 1.0
fbiC 1303584 c.654C>G synonymous_variant 0.13
fbiC 1303706 p.Leu259Arg missense_variant 0.96
fbiC 1304691 c.1761G>C synonymous_variant 0.16
fbiC 1304694 c.1764A>C synonymous_variant 0.16
fbiC 1304703 c.1773C>G synonymous_variant 0.15
fbiC 1304715 c.1785G>C synonymous_variant 0.14
fbiC 1304727 c.1797A>G synonymous_variant 0.15
fbiC 1304742 c.1812T>C synonymous_variant 0.19
fbiC 1304748 c.1818T>C synonymous_variant 0.19
fbiC 1304754 c.1824G>A synonymous_variant 0.15
fbiC 1304757 c.1827A>G synonymous_variant 0.17
fbiC 1304784 c.1854T>C synonymous_variant 0.2
fbiC 1304787 c.1857T>C synonymous_variant 0.2
fbiC 1304790 c.1860C>G synonymous_variant 0.22
fbiC 1304808 c.1878C>G synonymous_variant 0.26
fbiC 1304811 c.1881C>G synonymous_variant 0.21
fbiC 1304817 c.1887T>C synonymous_variant 0.25
fbiC 1304829 c.1899T>C synonymous_variant 0.19
fbiC 1304878 p.Arg650Ser missense_variant 0.12
fbiC 1305384 c.2454G>T synonymous_variant 0.94
Rv1258c 1406724 p.Gln206Leu missense_variant 1.0
embR 1416800 p.Ala183Gly missense_variant 1.0
rrs 1472936 n.1091C>T non_coding_transcript_exon_variant 0.15
rrs 1472958 n.1113A>T non_coding_transcript_exon_variant 0.14
rrs 1472963 n.1118G>A non_coding_transcript_exon_variant 0.14
rrs 1472971 n.1126G>C non_coding_transcript_exon_variant 0.15
rrs 1472982 n.1137G>C non_coding_transcript_exon_variant 0.15
rrs 1472987 n.1142G>T non_coding_transcript_exon_variant 0.14
rrs 1472988 n.1143T>A non_coding_transcript_exon_variant 0.14
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.14
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.15
rrs 1473002 n.1157G>T non_coding_transcript_exon_variant 0.15
rrs 1473004 n.1159T>A non_coding_transcript_exon_variant 0.15
rrs 1473008 n.1163C>A non_coding_transcript_exon_variant 0.15
rrs 1473009 n.1164T>C non_coding_transcript_exon_variant 0.15
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.12
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.14
rrl 1474376 n.719T>C non_coding_transcript_exon_variant 0.15
rrl 1474904 n.1247G>A non_coding_transcript_exon_variant 0.14
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.16
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.15
rrl 1475209 n.1552G>C non_coding_transcript_exon_variant 0.15
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.15
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.15
rrl 1475313 n.1656G>A non_coding_transcript_exon_variant 0.12
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.19
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.19
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.22
rrl 1475638 n.1981C>T non_coding_transcript_exon_variant 0.18
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.18
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.18
rrl 1475659 n.2002G>T non_coding_transcript_exon_variant 0.21
rrl 1476336 n.2679C>T non_coding_transcript_exon_variant 0.36
rrl 1476356 n.2699C>A non_coding_transcript_exon_variant 0.45
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.45
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.45
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.45
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.52
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.58
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.58
rrl 1476383 n.2726T>G non_coding_transcript_exon_variant 0.58
rrl 1476384 n.2727G>T non_coding_transcript_exon_variant 0.53
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.55
rrl 1476411 n.2754G>A non_coding_transcript_exon_variant 0.55
rrl 1476425 n.2768G>A non_coding_transcript_exon_variant 0.53
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.51
rrl 1476442 n.2785T>A non_coding_transcript_exon_variant 0.51
rrl 1476443 n.2786G>T non_coding_transcript_exon_variant 0.51
rrl 1476455 n.2798C>A non_coding_transcript_exon_variant 0.5
rrl 1476456 n.2799A>T non_coding_transcript_exon_variant 0.5
rrl 1476463 n.2806C>T non_coding_transcript_exon_variant 0.47
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.47
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.23
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.14
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.14
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.15
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.14
fabG1 1673153 c.-287C>G upstream_gene_variant 1.0
inhA 1674561 c.360C>T synonymous_variant 0.15
inhA 1674564 c.363C>T synonymous_variant 0.19
inhA 1674582 c.381T>C synonymous_variant 0.19
inhA 1674585 c.384T>C synonymous_variant 0.18
inhA 1674589 p.Met130Leu missense_variant 0.19
inhA 1674624 c.423A>C synonymous_variant 0.22
inhA 1674627 c.426T>G synonymous_variant 0.23
inhA 1674630 c.429C>G synonymous_variant 0.23
inhA 1674636 c.435C>G synonymous_variant 0.24
inhA 1674654 c.453G>C synonymous_variant 0.25
inhA 1674693 c.492C>G synonymous_variant 0.19
rpsA 1833555 p.Thr5Ser missense_variant 0.96
rpsA 1833787 c.246C>G synonymous_variant 0.18
rpsA 1833790 c.249T>A synonymous_variant 0.18
rpsA 1833799 c.258C>G synonymous_variant 0.21
rpsA 1833811 c.270G>C synonymous_variant 0.19
rpsA 1833838 c.297G>C synonymous_variant 0.19
rpsA 1833841 c.300C>G synonymous_variant 0.19
rpsA 1833847 c.306C>G synonymous_variant 0.16
rpsA 1833856 c.315A>G synonymous_variant 0.16
rpsA 1833862 c.321G>T synonymous_variant 0.16
rpsA 1833874 c.333T>C synonymous_variant 0.15
rpsA 1833928 c.387G>C synonymous_variant 0.13
rpsA 1833940 c.399C>G synonymous_variant 0.13
rpsA 1833970 c.429G>C synonymous_variant 0.14
rpsA 1833979 c.438T>C synonymous_variant 0.16
rpsA 1834000 c.459G>C synonymous_variant 0.22
rpsA 1834015 c.474G>C synonymous_variant 0.24
rpsA 1834021 c.480C>T synonymous_variant 0.27
rpsA 1834073 p.Lys178* stop_gained 0.78
rpsA 1834150 c.609G>C synonymous_variant 0.14
rpsA 1834154 p.Asn205Gln missense_variant 0.14
rpsA 1834157 c.616T>C synonymous_variant 0.14
rpsA 1834162 c.621A>G synonymous_variant 0.14
rpsA 1834165 c.624A>G synonymous_variant 0.14
rpsA 1834169 p.Thr210Ala missense_variant 0.14
rpsA 1834177 c.636A>C synonymous_variant 0.14
rpsA 1834186 c.645C>G synonymous_variant 0.15
rpsA 1834189 c.648G>C synonymous_variant 0.15
rpsA 1834195 c.654G>C synonymous_variant 0.16
rpsA 1834222 c.681T>C synonymous_variant 0.32
rpsA 1834225 c.684C>G synonymous_variant 0.26
rpsA 1834240 c.699T>C synonymous_variant 0.3
rpsA 1834249 c.708T>C synonymous_variant 0.33
rpsA 1834261 c.720A>C synonymous_variant 0.26
rpsA 1834264 c.723G>C synonymous_variant 0.25
rpsA 1834297 c.756C>G synonymous_variant 0.24
rpsA 1834303 c.762T>G synonymous_variant 0.24
rpsA 1834306 c.765T>C synonymous_variant 0.24
rpsA 1834348 c.807T>C synonymous_variant 0.24
rpsA 1834366 c.825A>G synonymous_variant 0.16
rpsA 1834375 c.834G>A synonymous_variant 0.21
rpsA 1834396 c.855G>C synonymous_variant 0.19
rpsA 1834411 c.870T>C synonymous_variant 0.17
rpsA 1834417 c.876G>C synonymous_variant 0.17
rpsA 1834423 c.882G>C synonymous_variant 0.18
rpsA 1834435 c.894G>C synonymous_variant 0.19
rpsA 1834451 c.910T>C synonymous_variant 0.19
rpsA 1834465 c.924T>C synonymous_variant 0.18
rpsA 1834468 c.927A>G synonymous_variant 0.18
rpsA 1834474 c.933C>G synonymous_variant 0.18
rpsA 1834489 c.948T>C synonymous_variant 0.18
rpsA 1834498 c.957C>T synonymous_variant 0.13
PPE35 2167669 p.Phe982Leu missense_variant 1.0
kasA 2517947 c.-168C>T upstream_gene_variant 0.12
kasA 2518687 c.573C>T synonymous_variant 0.12
Rv2752c 3065952 c.240C>T synonymous_variant 0.13
Rv2752c 3065955 c.235_237delTTGinsCTC synonymous_variant 0.13
Rv2752c 3065993 p.Val67Ile missense_variant 0.13
Rv2752c 3065997 c.195C>G synonymous_variant 0.12
Rv2752c 3066234 c.-43G>A upstream_gene_variant 1.0
thyX 3067355 c.591A>C synonymous_variant 0.2
thyX 3067367 c.579G>C synonymous_variant 0.15
thyX 3067376 c.570G>C synonymous_variant 0.21
thyX 3067391 c.555G>C synonymous_variant 0.18
thyX 3067394 c.552G>C synonymous_variant 0.16
thyX 3067412 c.534C>G synonymous_variant 0.2
thyX 3067439 c.507A>G synonymous_variant 0.21
thyX 3067445 c.501C>G synonymous_variant 0.21
thyX 3067451 c.495G>A synonymous_variant 0.2
thyX 3067457 c.489C>G synonymous_variant 0.19
thyX 3067463 p.Ile161Val missense_variant 0.14
thyA 3074214 c.258T>C synonymous_variant 0.17
fbiB 3642276 c.743delC frameshift_variant 1.0
rpoA 3877953 c.555G>A synonymous_variant 0.15
rpoA 3878022 c.486T>C synonymous_variant 0.14
rpoA 3878025 c.483C>T synonymous_variant 0.15
rpoA 3878028 c.480G>C synonymous_variant 0.14
rpoA 3878031 c.477T>C synonymous_variant 0.14
rpoA 3878040 c.468T>C synonymous_variant 0.14
rpoA 3878046 c.462T>C synonymous_variant 0.16
rpoA 3878049 c.459G>C synonymous_variant 0.16
rpoA 3878055 c.453A>G synonymous_variant 0.14
rpoA 3878082 c.426T>C synonymous_variant 0.15
rpoA 3878111 p.Lys133Gln missense_variant 0.91
ddn 3986655 c.-189A>T upstream_gene_variant 0.13
ddn 3986660 c.-184C>T upstream_gene_variant 0.12
clpC1 4038661 p.Ser682Thr missense_variant 0.12
clpC1 4039388 c.1317C>A synonymous_variant 0.12
clpC1 4039430 c.1275T>C synonymous_variant 0.14
clpC1 4039442 c.1263A>G synonymous_variant 0.14
clpC1 4039448 c.1257A>G synonymous_variant 0.14
clpC1 4039454 c.1251A>G synonymous_variant 0.14
clpC1 4039463 c.1242C>G synonymous_variant 0.15
clpC1 4039466 c.1239T>C synonymous_variant 0.16
clpC1 4039469 c.1236T>C synonymous_variant 0.17
clpC1 4039481 c.1224T>G synonymous_variant 0.2
clpC1 4039484 c.1221T>G synonymous_variant 0.25
clpC1 4039565 c.1140G>C synonymous_variant 0.12
clpC1 4039682 c.1023C>G synonymous_variant 0.2
clpC1 4039685 c.1020C>T synonymous_variant 0.2
clpC1 4039694 c.1011G>C synonymous_variant 0.2
clpC1 4039724 c.981A>G synonymous_variant 0.13
clpC1 4039748 c.957G>C synonymous_variant 0.14
clpC1 4039757 c.948A>G synonymous_variant 0.13
clpC1 4039766 c.939T>C synonymous_variant 0.13
clpC1 4040393 c.312G>C synonymous_variant 0.14
clpC1 4040411 c.294T>C synonymous_variant 0.15
clpC1 4040423 c.282A>G synonymous_variant 0.16
clpC1 4040426 c.279T>C synonymous_variant 0.17
clpC1 4040431 c.274T>C synonymous_variant 0.17
clpC1 4040441 c.264C>G synonymous_variant 0.19
clpC1 4040444 c.261C>G synonymous_variant 0.17
embA 4242703 c.-530C>T upstream_gene_variant 1.0
embB 4247497 c.984T>C synonymous_variant 0.14
embB 4248206 p.Ser565Gly missense_variant 0.14
embB 4248241 c.1728C>T synonymous_variant 0.15
embB 4248265 c.1752C>T synonymous_variant 0.16
embB 4248266 c.1753C>T synonymous_variant 0.16
embB 4248277 c.1764G>C synonymous_variant 0.16
embB 4248304 c.1791G>T synonymous_variant 0.12
embB 4248322 c.1809G>C synonymous_variant 0.16
embB 4248343 c.1830G>C synonymous_variant 0.16
embB 4248346 c.1833G>C synonymous_variant 0.18
embB 4248350 c.1837T>C synonymous_variant 0.16
embB 4248355 c.1842A>G synonymous_variant 0.17
embB 4248358 c.1845C>G synonymous_variant 0.16
embB 4248361 c.1848A>G synonymous_variant 0.17
embB 4248362 p.Ser617Ala missense_variant 0.17
embB 4249144 c.2631G>C synonymous_variant 1.0
embB 4249444 c.2931T>C synonymous_variant 0.19
embB 4249447 c.2934G>C synonymous_variant 0.15
embB 4249456 c.2943G>C synonymous_variant 0.14
embB 4249469 p.Leu986Met missense_variant 0.14
embB 4249483 c.2970C>G synonymous_variant 0.18
embB 4249486 c.2973T>G synonymous_variant 0.17
embB 4249487 c.2974T>C synonymous_variant 0.17
embB 4249521 p.Ala1003Val missense_variant 0.14
embB 4249525 c.3012T>C synonymous_variant 0.14
embB 4249528 c.3015C>G synonymous_variant 0.14
embB 4249529 p.Ile1006Val missense_variant 0.14
embB 4249532 p.Ala1007Thr missense_variant 0.14
embB 4249537 c.3024A>G synonymous_variant 0.14
embB 4249558 c.3045A>C synonymous_variant 0.14
embB 4249568 p.Ser1019Thr missense_variant 0.13