Run ID: SRR13861261
Sample name:
Date: 03-04-2023 09:27:28
Number of reads: 667954
Percentage reads mapped: 33.43
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6214 | c.975G>C | synonymous_variant | 0.17 |
gyrB | 6217 | c.978G>C | synonymous_variant | 0.17 |
gyrB | 6223 | c.984G>C | synonymous_variant | 0.18 |
gyrA | 6778 | c.-524C>T | upstream_gene_variant | 0.14 |
gyrA | 7469 | c.168C>T | synonymous_variant | 0.13 |
gyrA | 7480 | p.Phe60Tyr | missense_variant | 0.13 |
gyrA | 7490 | c.189C>T | synonymous_variant | 0.14 |
gyrA | 8156 | c.855T>C | synonymous_variant | 0.19 |
gyrA | 8168 | c.867A>G | synonymous_variant | 0.19 |
gyrA | 8174 | c.873C>G | synonymous_variant | 0.18 |
gyrA | 8177 | c.876A>C | synonymous_variant | 0.21 |
gyrA | 8198 | c.897T>C | synonymous_variant | 0.3 |
gyrA | 8204 | c.903C>T | synonymous_variant | 0.26 |
gyrA | 8207 | c.906T>C | synonymous_variant | 0.26 |
gyrA | 8216 | c.915G>A | synonymous_variant | 0.24 |
gyrA | 8219 | c.918T>C | synonymous_variant | 0.24 |
gyrA | 8225 | c.924T>C | synonymous_variant | 0.25 |
gyrA | 8234 | c.933T>G | synonymous_variant | 0.24 |
gyrA | 8235 | c.934_936delTTAinsCTG | synonymous_variant | 0.24 |
gyrA | 8253 | p.Ile318Leu | missense_variant | 0.23 |
gyrA | 8264 | c.963T>C | synonymous_variant | 0.24 |
gyrA | 8267 | c.966G>C | synonymous_variant | 0.24 |
gyrA | 8270 | c.969G>C | synonymous_variant | 0.24 |
gyrA | 8283 | p.Ile328Leu | missense_variant | 0.21 |
gyrA | 8288 | c.987T>C | synonymous_variant | 0.21 |
gyrA | 8294 | c.993T>C | synonymous_variant | 0.25 |
gyrA | 8324 | c.1023T>C | synonymous_variant | 0.24 |
gyrA | 8339 | c.1038A>G | synonymous_variant | 0.22 |
gyrA | 8342 | c.1041G>C | synonymous_variant | 0.21 |
gyrA | 8366 | c.1065G>C | synonymous_variant | 0.25 |
gyrA | 8375 | c.1074G>C | synonymous_variant | 0.24 |
gyrA | 8391 | p.Tyr364His | missense_variant | 0.27 |
gyrA | 8399 | c.1098T>C | synonymous_variant | 0.29 |
gyrA | 8420 | c.1119T>C | synonymous_variant | 0.26 |
gyrA | 8423 | c.1122G>C | synonymous_variant | 0.26 |
gyrA | 8442 | c.1141C>T | synonymous_variant | 0.23 |
gyrA | 8453 | c.1152A>C | synonymous_variant | 0.22 |
gyrA | 8462 | c.1161A>G | synonymous_variant | 0.23 |
gyrA | 8471 | c.1170T>C | synonymous_variant | 0.2 |
gyrA | 8480 | c.1179C>T | synonymous_variant | 0.17 |
gyrA | 8489 | c.1188A>G | synonymous_variant | 0.14 |
gyrA | 8498 | c.1197C>T | synonymous_variant | 0.13 |
gyrA | 8619 | c.1318T>C | synonymous_variant | 0.21 |
gyrA | 8624 | c.1323G>C | synonymous_variant | 0.23 |
gyrA | 8627 | c.1326C>G | synonymous_variant | 0.23 |
gyrA | 8636 | c.1335A>G | synonymous_variant | 0.24 |
gyrA | 8642 | c.1341A>G | synonymous_variant | 0.24 |
gyrA | 8645 | c.1344C>G | synonymous_variant | 0.25 |
gyrA | 8672 | c.1371A>G | synonymous_variant | 0.17 |
gyrA | 8693 | c.1392T>C | synonymous_variant | 0.21 |
gyrA | 8699 | c.1398A>G | synonymous_variant | 0.2 |
gyrA | 8711 | c.1410A>C | synonymous_variant | 0.23 |
gyrA | 8714 | c.1413A>G | synonymous_variant | 0.22 |
gyrA | 8717 | c.1416C>G | synonymous_variant | 0.22 |
gyrA | 8720 | c.1419G>A | synonymous_variant | 0.23 |
gyrA | 8729 | c.1428T>C | synonymous_variant | 0.24 |
gyrA | 8732 | c.1431G>C | synonymous_variant | 0.22 |
gyrA | 8747 | c.1446A>G | synonymous_variant | 0.23 |
gyrA | 8756 | c.1455A>G | synonymous_variant | 0.19 |
gyrA | 8786 | c.1485T>C | synonymous_variant | 0.2 |
gyrA | 8796 | p.Ile499Val | missense_variant | 0.19 |
gyrA | 8801 | c.1500G>C | synonymous_variant | 0.19 |
gyrA | 8810 | c.1509A>C | synonymous_variant | 0.18 |
gyrA | 8816 | c.1515C>T | synonymous_variant | 0.18 |
gyrA | 8829 | c.1528T>C | synonymous_variant | 0.17 |
gyrA | 8837 | c.1536C>T | synonymous_variant | 0.16 |
gyrA | 8858 | c.1557T>C | synonymous_variant | 0.17 |
gyrA | 8867 | c.1566A>G | synonymous_variant | 0.16 |
gyrA | 8870 | c.1569G>C | synonymous_variant | 0.15 |
ccsA | 620331 | c.441C>T | synonymous_variant | 0.15 |
ccsA | 620362 | p.Ala158Thr | missense_variant | 0.12 |
ccsA | 620367 | c.477T>C | synonymous_variant | 0.13 |
rpoB | 760361 | c.555T>C | synonymous_variant | 0.14 |
rpoB | 760406 | c.600G>C | synonymous_variant | 0.17 |
rpoB | 760418 | c.612G>C | synonymous_variant | 0.18 |
rpoB | 760424 | c.618C>G | synonymous_variant | 0.18 |
rpoB | 760430 | c.624T>C | synonymous_variant | 0.16 |
rpoB | 760475 | c.669A>G | synonymous_variant | 0.16 |
rpoB | 760481 | c.675G>C | synonymous_variant | 0.18 |
rpoB | 760484 | c.678A>G | synonymous_variant | 0.18 |
rpoB | 760514 | c.708C>T | synonymous_variant | 0.18 |
rpoB | 760522 | p.Ser239Asn | missense_variant | 0.19 |
rpoB | 761636 | c.1830G>T | synonymous_variant | 0.18 |
rpoB | 761645 | c.1839C>G | synonymous_variant | 0.14 |
rpoB | 761648 | c.1842T>C | synonymous_variant | 0.14 |
rpoB | 761687 | c.1881C>T | synonymous_variant | 0.12 |
rpoB | 761735 | c.1929C>G | synonymous_variant | 0.14 |
rpoB | 761747 | c.1941G>C | synonymous_variant | 0.16 |
rpoB | 761750 | c.1944G>C | synonymous_variant | 0.15 |
rpoB | 761765 | c.1959T>C | synonymous_variant | 0.14 |
rpoB | 761847 | p.Cys681Ser | missense_variant | 0.12 |
rpoC | 762698 | c.-672C>T | upstream_gene_variant | 1.0 |
rpoB | 762958 | p.Leu1051Pro | missense_variant | 0.87 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.14 |
rpoC | 763040 | c.-330C>G | upstream_gene_variant | 0.16 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.17 |
rpoC | 763076 | c.-294C>G | upstream_gene_variant | 0.18 |
rpoC | 763085 | c.-285C>G | upstream_gene_variant | 0.19 |
rpoC | 763528 | c.159G>A | synonymous_variant | 0.15 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.14 |
rpoC | 763933 | c.564C>T | synonymous_variant | 0.19 |
rpoC | 763945 | c.576T>C | synonymous_variant | 0.24 |
rpoC | 763960 | c.591T>C | synonymous_variant | 0.26 |
rpoC | 763967 | p.Gly200Ser | missense_variant | 0.25 |
rpoC | 763978 | c.609C>G | synonymous_variant | 0.27 |
rpoC | 763996 | c.627T>C | synonymous_variant | 0.28 |
rpoC | 764005 | c.636G>C | synonymous_variant | 0.28 |
rpoC | 764011 | c.642T>C | synonymous_variant | 0.27 |
rpoC | 764024 | c.655T>C | synonymous_variant | 0.24 |
rpoC | 764040 | p.Ser224Asn | missense_variant | 0.32 |
rpoC | 764044 | c.675T>C | synonymous_variant | 0.32 |
rpoC | 764059 | c.690G>C | synonymous_variant | 0.25 |
rpoC | 764083 | c.714A>G | synonymous_variant | 0.2 |
rpoC | 764098 | c.729A>G | synonymous_variant | 0.17 |
rpoC | 764101 | c.732C>G | synonymous_variant | 0.16 |
rpoC | 764257 | c.888G>C | synonymous_variant | 0.15 |
rpoC | 764266 | c.897T>C | synonymous_variant | 0.15 |
rpoC | 764269 | c.900G>C | synonymous_variant | 0.15 |
rpoC | 764282 | p.Ser305Thr | missense_variant | 0.15 |
rpoC | 764320 | c.951C>G | synonymous_variant | 0.14 |
rpoC | 764365 | c.996C>T | synonymous_variant | 0.16 |
rpoC | 764381 | p.Ser338Thr | missense_variant | 0.12 |
rpoC | 764405 | c.1036A>C | synonymous_variant | 0.27 |
rpoC | 764431 | c.1062G>C | synonymous_variant | 0.17 |
rpoC | 764434 | c.1065A>G | synonymous_variant | 0.3 |
rpoC | 764441 | p.Ile358Leu | missense_variant | 0.15 |
rpoC | 764446 | c.1077T>C | synonymous_variant | 0.35 |
rpoC | 764449 | c.1080G>C | synonymous_variant | 0.19 |
rpoC | 764451 | p.Gly361Ala | missense_variant | 0.14 |
rpoC | 764455 | c.1086G>C | synonymous_variant | 0.22 |
rpoC | 764458 | c.1089G>C | synonymous_variant | 0.15 |
rpoC | 764461 | c.1092A>G | synonymous_variant | 0.18 |
rpoC | 764472 | p.Asn368Ser | missense_variant | 0.14 |
rpoC | 764479 | c.1110G>A | synonymous_variant | 0.15 |
rpoC | 764485 | c.1116G>C | synonymous_variant | 0.15 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.16 |
rpoC | 764498 | p.Ser377Ala | missense_variant | 0.16 |
rpoC | 764503 | c.1134G>C | synonymous_variant | 0.15 |
rpoC | 764509 | c.1140G>C | synonymous_variant | 0.15 |
rpoC | 764513 | p.Phe382Leu | missense_variant | 0.15 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.24 |
rpoC | 764527 | c.1158C>T | synonymous_variant | 0.13 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.13 |
rpoC | 764893 | c.1524T>C | synonymous_variant | 0.15 |
rpoC | 764911 | c.1542A>G | synonymous_variant | 0.15 |
rpoC | 765421 | c.2052C>G | synonymous_variant | 0.13 |
rpoC | 765451 | c.2082C>G | synonymous_variant | 0.14 |
rpoC | 765454 | c.2085C>G | synonymous_variant | 0.13 |
rpoC | 765541 | c.2172C>G | synonymous_variant | 0.19 |
rpoC | 765553 | c.2184C>T | synonymous_variant | 0.19 |
rpoC | 765556 | c.2187G>C | synonymous_variant | 0.19 |
rpoC | 765559 | c.2190G>C | synonymous_variant | 0.24 |
rpoC | 765578 | c.2209C>T | synonymous_variant | 0.17 |
rpoC | 765583 | c.2214G>T | synonymous_variant | 0.12 |
rpoC | 765613 | p.His748Gln | missense_variant | 0.16 |
rpoC | 765625 | c.2256C>G | synonymous_variant | 0.15 |
rpoC | 765628 | c.2259G>C | synonymous_variant | 0.15 |
rpoC | 765631 | p.Asp754Glu | missense_variant | 0.16 |
rpoC | 765658 | c.2289C>T | synonymous_variant | 0.17 |
rpoC | 765700 | c.2331T>C | synonymous_variant | 0.15 |
rpoC | 767158 | c.3789T>C | synonymous_variant | 0.15 |
rpoC | 767167 | c.3798C>G | synonymous_variant | 0.14 |
mmpL5 | 776000 | p.Leu827Ile | missense_variant | 0.18 |
rplC | 801267 | c.459A>C | synonymous_variant | 0.2 |
rplC | 801270 | c.462T>C | synonymous_variant | 0.2 |
rplC | 801276 | c.468G>C | synonymous_variant | 0.19 |
rplC | 801279 | c.471G>C | synonymous_variant | 0.13 |
rplC | 801282 | c.474G>C | synonymous_variant | 0.12 |
rplC | 801301 | c.493C>A | synonymous_variant | 0.13 |
rplC | 801312 | c.504G>C | synonymous_variant | 0.12 |
rplC | 801357 | c.549T>C | synonymous_variant | 0.13 |
fbiC | 1302962 | p.Ala11Gly | missense_variant | 1.0 |
fbiC | 1303584 | c.654C>G | synonymous_variant | 0.13 |
fbiC | 1303706 | p.Leu259Arg | missense_variant | 0.96 |
fbiC | 1304691 | c.1761G>C | synonymous_variant | 0.16 |
fbiC | 1304694 | c.1764A>C | synonymous_variant | 0.16 |
fbiC | 1304703 | c.1773C>G | synonymous_variant | 0.15 |
fbiC | 1304715 | c.1785G>C | synonymous_variant | 0.14 |
fbiC | 1304727 | c.1797A>G | synonymous_variant | 0.15 |
fbiC | 1304742 | c.1812T>C | synonymous_variant | 0.19 |
fbiC | 1304748 | c.1818T>C | synonymous_variant | 0.19 |
fbiC | 1304754 | c.1824G>A | synonymous_variant | 0.15 |
fbiC | 1304757 | c.1827A>G | synonymous_variant | 0.17 |
fbiC | 1304784 | c.1854T>C | synonymous_variant | 0.2 |
fbiC | 1304787 | c.1857T>C | synonymous_variant | 0.2 |
fbiC | 1304790 | c.1860C>G | synonymous_variant | 0.22 |
fbiC | 1304808 | c.1878C>G | synonymous_variant | 0.26 |
fbiC | 1304811 | c.1881C>G | synonymous_variant | 0.21 |
fbiC | 1304817 | c.1887T>C | synonymous_variant | 0.25 |
fbiC | 1304829 | c.1899T>C | synonymous_variant | 0.19 |
fbiC | 1304878 | p.Arg650Ser | missense_variant | 0.12 |
fbiC | 1305384 | c.2454G>T | synonymous_variant | 0.94 |
Rv1258c | 1406724 | p.Gln206Leu | missense_variant | 1.0 |
embR | 1416800 | p.Ala183Gly | missense_variant | 1.0 |
rrs | 1472936 | n.1091C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472958 | n.1113A>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472963 | n.1118G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472971 | n.1126G>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472982 | n.1137G>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472987 | n.1142G>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472988 | n.1143T>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473002 | n.1157G>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473008 | n.1163C>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474376 | n.719T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474904 | n.1247G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475199 | n.1542G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475206 | n.1549C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475209 | n.1552G>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475213 | n.1556C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475291 | n.1634A>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1475313 | n.1656G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475599 | n.1942A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475608 | n.1951T>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475638 | n.1981C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475642 | n.1985T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475657 | n.2000A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475659 | n.2002G>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.45 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.52 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.53 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.51 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.47 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476583 | n.2926G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.14 |
fabG1 | 1673153 | c.-287C>G | upstream_gene_variant | 1.0 |
inhA | 1674561 | c.360C>T | synonymous_variant | 0.15 |
inhA | 1674564 | c.363C>T | synonymous_variant | 0.19 |
inhA | 1674582 | c.381T>C | synonymous_variant | 0.19 |
inhA | 1674585 | c.384T>C | synonymous_variant | 0.18 |
inhA | 1674589 | p.Met130Leu | missense_variant | 0.19 |
inhA | 1674624 | c.423A>C | synonymous_variant | 0.22 |
inhA | 1674627 | c.426T>G | synonymous_variant | 0.23 |
inhA | 1674630 | c.429C>G | synonymous_variant | 0.23 |
inhA | 1674636 | c.435C>G | synonymous_variant | 0.24 |
inhA | 1674654 | c.453G>C | synonymous_variant | 0.25 |
inhA | 1674693 | c.492C>G | synonymous_variant | 0.19 |
rpsA | 1833555 | p.Thr5Ser | missense_variant | 0.96 |
rpsA | 1833787 | c.246C>G | synonymous_variant | 0.18 |
rpsA | 1833790 | c.249T>A | synonymous_variant | 0.18 |
rpsA | 1833799 | c.258C>G | synonymous_variant | 0.21 |
rpsA | 1833811 | c.270G>C | synonymous_variant | 0.19 |
rpsA | 1833838 | c.297G>C | synonymous_variant | 0.19 |
rpsA | 1833841 | c.300C>G | synonymous_variant | 0.19 |
rpsA | 1833847 | c.306C>G | synonymous_variant | 0.16 |
rpsA | 1833856 | c.315A>G | synonymous_variant | 0.16 |
rpsA | 1833862 | c.321G>T | synonymous_variant | 0.16 |
rpsA | 1833874 | c.333T>C | synonymous_variant | 0.15 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.13 |
rpsA | 1833940 | c.399C>G | synonymous_variant | 0.13 |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.14 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.16 |
rpsA | 1834000 | c.459G>C | synonymous_variant | 0.22 |
rpsA | 1834015 | c.474G>C | synonymous_variant | 0.24 |
rpsA | 1834021 | c.480C>T | synonymous_variant | 0.27 |
rpsA | 1834073 | p.Lys178* | stop_gained | 0.78 |
rpsA | 1834150 | c.609G>C | synonymous_variant | 0.14 |
rpsA | 1834154 | p.Asn205Gln | missense_variant | 0.14 |
rpsA | 1834157 | c.616T>C | synonymous_variant | 0.14 |
rpsA | 1834162 | c.621A>G | synonymous_variant | 0.14 |
rpsA | 1834165 | c.624A>G | synonymous_variant | 0.14 |
rpsA | 1834169 | p.Thr210Ala | missense_variant | 0.14 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 0.14 |
rpsA | 1834186 | c.645C>G | synonymous_variant | 0.15 |
rpsA | 1834189 | c.648G>C | synonymous_variant | 0.15 |
rpsA | 1834195 | c.654G>C | synonymous_variant | 0.16 |
rpsA | 1834222 | c.681T>C | synonymous_variant | 0.32 |
rpsA | 1834225 | c.684C>G | synonymous_variant | 0.26 |
rpsA | 1834240 | c.699T>C | synonymous_variant | 0.3 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.33 |
rpsA | 1834261 | c.720A>C | synonymous_variant | 0.26 |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.25 |
rpsA | 1834297 | c.756C>G | synonymous_variant | 0.24 |
rpsA | 1834303 | c.762T>G | synonymous_variant | 0.24 |
rpsA | 1834306 | c.765T>C | synonymous_variant | 0.24 |
rpsA | 1834348 | c.807T>C | synonymous_variant | 0.24 |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.16 |
rpsA | 1834375 | c.834G>A | synonymous_variant | 0.21 |
rpsA | 1834396 | c.855G>C | synonymous_variant | 0.19 |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.17 |
rpsA | 1834417 | c.876G>C | synonymous_variant | 0.17 |
rpsA | 1834423 | c.882G>C | synonymous_variant | 0.18 |
rpsA | 1834435 | c.894G>C | synonymous_variant | 0.19 |
rpsA | 1834451 | c.910T>C | synonymous_variant | 0.19 |
rpsA | 1834465 | c.924T>C | synonymous_variant | 0.18 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.18 |
rpsA | 1834474 | c.933C>G | synonymous_variant | 0.18 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.18 |
rpsA | 1834498 | c.957C>T | synonymous_variant | 0.13 |
PPE35 | 2167669 | p.Phe982Leu | missense_variant | 1.0 |
kasA | 2517947 | c.-168C>T | upstream_gene_variant | 0.12 |
kasA | 2518687 | c.573C>T | synonymous_variant | 0.12 |
Rv2752c | 3065952 | c.240C>T | synonymous_variant | 0.13 |
Rv2752c | 3065955 | c.235_237delTTGinsCTC | synonymous_variant | 0.13 |
Rv2752c | 3065993 | p.Val67Ile | missense_variant | 0.13 |
Rv2752c | 3065997 | c.195C>G | synonymous_variant | 0.12 |
Rv2752c | 3066234 | c.-43G>A | upstream_gene_variant | 1.0 |
thyX | 3067355 | c.591A>C | synonymous_variant | 0.2 |
thyX | 3067367 | c.579G>C | synonymous_variant | 0.15 |
thyX | 3067376 | c.570G>C | synonymous_variant | 0.21 |
thyX | 3067391 | c.555G>C | synonymous_variant | 0.18 |
thyX | 3067394 | c.552G>C | synonymous_variant | 0.16 |
thyX | 3067412 | c.534C>G | synonymous_variant | 0.2 |
thyX | 3067439 | c.507A>G | synonymous_variant | 0.21 |
thyX | 3067445 | c.501C>G | synonymous_variant | 0.21 |
thyX | 3067451 | c.495G>A | synonymous_variant | 0.2 |
thyX | 3067457 | c.489C>G | synonymous_variant | 0.19 |
thyX | 3067463 | p.Ile161Val | missense_variant | 0.14 |
thyA | 3074214 | c.258T>C | synonymous_variant | 0.17 |
fbiB | 3642276 | c.743delC | frameshift_variant | 1.0 |
rpoA | 3877953 | c.555G>A | synonymous_variant | 0.15 |
rpoA | 3878022 | c.486T>C | synonymous_variant | 0.14 |
rpoA | 3878025 | c.483C>T | synonymous_variant | 0.15 |
rpoA | 3878028 | c.480G>C | synonymous_variant | 0.14 |
rpoA | 3878031 | c.477T>C | synonymous_variant | 0.14 |
rpoA | 3878040 | c.468T>C | synonymous_variant | 0.14 |
rpoA | 3878046 | c.462T>C | synonymous_variant | 0.16 |
rpoA | 3878049 | c.459G>C | synonymous_variant | 0.16 |
rpoA | 3878055 | c.453A>G | synonymous_variant | 0.14 |
rpoA | 3878082 | c.426T>C | synonymous_variant | 0.15 |
rpoA | 3878111 | p.Lys133Gln | missense_variant | 0.91 |
ddn | 3986655 | c.-189A>T | upstream_gene_variant | 0.13 |
ddn | 3986660 | c.-184C>T | upstream_gene_variant | 0.12 |
clpC1 | 4038661 | p.Ser682Thr | missense_variant | 0.12 |
clpC1 | 4039388 | c.1317C>A | synonymous_variant | 0.12 |
clpC1 | 4039430 | c.1275T>C | synonymous_variant | 0.14 |
clpC1 | 4039442 | c.1263A>G | synonymous_variant | 0.14 |
clpC1 | 4039448 | c.1257A>G | synonymous_variant | 0.14 |
clpC1 | 4039454 | c.1251A>G | synonymous_variant | 0.14 |
clpC1 | 4039463 | c.1242C>G | synonymous_variant | 0.15 |
clpC1 | 4039466 | c.1239T>C | synonymous_variant | 0.16 |
clpC1 | 4039469 | c.1236T>C | synonymous_variant | 0.17 |
clpC1 | 4039481 | c.1224T>G | synonymous_variant | 0.2 |
clpC1 | 4039484 | c.1221T>G | synonymous_variant | 0.25 |
clpC1 | 4039565 | c.1140G>C | synonymous_variant | 0.12 |
clpC1 | 4039682 | c.1023C>G | synonymous_variant | 0.2 |
clpC1 | 4039685 | c.1020C>T | synonymous_variant | 0.2 |
clpC1 | 4039694 | c.1011G>C | synonymous_variant | 0.2 |
clpC1 | 4039724 | c.981A>G | synonymous_variant | 0.13 |
clpC1 | 4039748 | c.957G>C | synonymous_variant | 0.14 |
clpC1 | 4039757 | c.948A>G | synonymous_variant | 0.13 |
clpC1 | 4039766 | c.939T>C | synonymous_variant | 0.13 |
clpC1 | 4040393 | c.312G>C | synonymous_variant | 0.14 |
clpC1 | 4040411 | c.294T>C | synonymous_variant | 0.15 |
clpC1 | 4040423 | c.282A>G | synonymous_variant | 0.16 |
clpC1 | 4040426 | c.279T>C | synonymous_variant | 0.17 |
clpC1 | 4040431 | c.274T>C | synonymous_variant | 0.17 |
clpC1 | 4040441 | c.264C>G | synonymous_variant | 0.19 |
clpC1 | 4040444 | c.261C>G | synonymous_variant | 0.17 |
embA | 4242703 | c.-530C>T | upstream_gene_variant | 1.0 |
embB | 4247497 | c.984T>C | synonymous_variant | 0.14 |
embB | 4248206 | p.Ser565Gly | missense_variant | 0.14 |
embB | 4248241 | c.1728C>T | synonymous_variant | 0.15 |
embB | 4248265 | c.1752C>T | synonymous_variant | 0.16 |
embB | 4248266 | c.1753C>T | synonymous_variant | 0.16 |
embB | 4248277 | c.1764G>C | synonymous_variant | 0.16 |
embB | 4248304 | c.1791G>T | synonymous_variant | 0.12 |
embB | 4248322 | c.1809G>C | synonymous_variant | 0.16 |
embB | 4248343 | c.1830G>C | synonymous_variant | 0.16 |
embB | 4248346 | c.1833G>C | synonymous_variant | 0.18 |
embB | 4248350 | c.1837T>C | synonymous_variant | 0.16 |
embB | 4248355 | c.1842A>G | synonymous_variant | 0.17 |
embB | 4248358 | c.1845C>G | synonymous_variant | 0.16 |
embB | 4248361 | c.1848A>G | synonymous_variant | 0.17 |
embB | 4248362 | p.Ser617Ala | missense_variant | 0.17 |
embB | 4249144 | c.2631G>C | synonymous_variant | 1.0 |
embB | 4249444 | c.2931T>C | synonymous_variant | 0.19 |
embB | 4249447 | c.2934G>C | synonymous_variant | 0.15 |
embB | 4249456 | c.2943G>C | synonymous_variant | 0.14 |
embB | 4249469 | p.Leu986Met | missense_variant | 0.14 |
embB | 4249483 | c.2970C>G | synonymous_variant | 0.18 |
embB | 4249486 | c.2973T>G | synonymous_variant | 0.17 |
embB | 4249487 | c.2974T>C | synonymous_variant | 0.17 |
embB | 4249521 | p.Ala1003Val | missense_variant | 0.14 |
embB | 4249525 | c.3012T>C | synonymous_variant | 0.14 |
embB | 4249528 | c.3015C>G | synonymous_variant | 0.14 |
embB | 4249529 | p.Ile1006Val | missense_variant | 0.14 |
embB | 4249532 | p.Ala1007Thr | missense_variant | 0.14 |
embB | 4249537 | c.3024A>G | synonymous_variant | 0.14 |
embB | 4249558 | c.3045A>C | synonymous_variant | 0.14 |
embB | 4249568 | p.Ser1019Thr | missense_variant | 0.13 |