Run ID: SRR13861478
Sample name:
Date: 03-04-2023 09:32:45
Number of reads: 3822074
Percentage reads mapped: 76.52
Strain: lineage4.9
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5258 | p.Lys7* | stop_gained | 1.0 |
gyrB | 7122 | c.1883_1884insA | frameshift_variant | 1.0 |
mmpL5 | 776374 | p.Arg703Cys | missense_variant | 1.0 |
mmpR5 | 779126 | p.Cys46Phe | missense_variant | 1.0 |
rplC | 801447 | p.Lys213Asn | missense_variant | 1.0 |
fbiC | 1303004 | p.Ala25Glu | missense_variant | 1.0 |
fbiC | 1303171 | p.Arg81Trp | missense_variant | 1.0 |
fbiC | 1303517 | p.Met196Thr | missense_variant | 1.0 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476268 | n.2611A>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476275 | n.2618T>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.3 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.14 |
rpsA | 1834640 | p.Glu367* | stop_gained | 1.0 |
ndh | 2103004 | c.39T>G | synonymous_variant | 1.0 |
PPE35 | 2170453 | p.Gly54Ser | missense_variant | 1.0 |
Rv1979c | 2223326 | c.-162C>T | upstream_gene_variant | 1.0 |
pncA | 2288748 | p.Ala165Asp | missense_variant | 1.0 |
kasA | 2518474 | p.Glu120Asp | missense_variant | 1.0 |
thyX | 3067529 | c.417C>G | synonymous_variant | 1.0 |
thyA | 3073764 | c.708T>C | synonymous_variant | 1.0 |
thyA | 3073862 | p.Gly204Ser | missense_variant | 1.0 |
thyA | 3073963 | p.Leu170Gln | missense_variant | 0.99 |
fbiD | 3339357 | c.240G>T | synonymous_variant | 1.0 |
Rv3083 | 3448352 | c.-152G>C | upstream_gene_variant | 1.0 |
Rv3083 | 3449624 | p.Lys374Met | missense_variant | 1.0 |
Rv3083 | 3449919 | c.1416C>A | synonymous_variant | 1.0 |
fbiB | 3642227 | p.Gln231His | missense_variant | 1.0 |
fbiB | 3642581 | c.1047A>C | synonymous_variant | 1.0 |
embA | 4244641 | p.Val470Gly | missense_variant | 1.0 |
embA | 4245197 | c.1965C>T | synonymous_variant | 0.99 |
embB | 4246641 | p.Ala43Glu | missense_variant | 1.0 |
embB | 4247233 | p.Asp240Glu | missense_variant | 1.0 |
ethA | 4327035 | p.Tyr147Asp | missense_variant | 1.0 |
ethR | 4327923 | p.Gln125His | missense_variant | 1.0 |