Run ID: SRR14165143
Sample name:
Date: 03-04-2023 10:16:22
Number of reads: 1769691
Percentage reads mapped: 96.78
Strain: lineage4.1.1.3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 1.0 |
lineage4.1.1.3 | Euro-American (X-type) | X1;X3 | RD193 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576108 | p.Ala254Gly | missense_variant | 0.18 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476268 | n.2611A>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476275 | n.2618T>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476279 | n.2622G>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.39 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.37 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.13 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289017 | c.225T>C | synonymous_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
rpoA | 3878630 | c.-123G>C | upstream_gene_variant | 0.14 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4249408 | c.2895G>A | synonymous_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |