Run ID: SRR14802103
Sample name:
Date: 03-04-2023 12:15:50
Number of reads: 3400449
Percentage reads mapped: 99.66
Strain: lineage4.3.3
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.3 | Euro-American (LAM) | LAM;T | RD115 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1473246 | n.1401A>G | non_coding_transcript_exon_variant | 0.98 | kanamycin, capreomycin, aminoglycosides, amikacin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 0.99 |
gyrA | 8040 | p.Gly247Ser | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9647 | c.2346C>G | synonymous_variant | 0.23 |
rpoC | 764367 | p.Gly333Ala | missense_variant | 0.24 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 0.99 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
fabG1 | 1673553 | p.Asp38Glu | missense_variant | 0.27 |
fabG1 | 1673558 | p.His40Pro | missense_variant | 0.18 |
rpsA | 1834836 | p.Met432Thr | missense_variant | 0.98 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2170065 | p.Ala183Gly | missense_variant | 0.26 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518919 | p.Gly269Ser | missense_variant | 0.98 |
kasA | 2519071 | p.Asp319Glu | missense_variant | 0.16 |
pepQ | 2860159 | p.Ala87Gly | missense_variant | 0.28 |
Rv2752c | 3067135 | c.-944C>T | upstream_gene_variant | 1.0 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 0.99 |
ald | 3087818 | p.Cys333Trp | missense_variant | 0.12 |
fbiD | 3339734 | p.Ala206Gly | missense_variant | 0.4 |
fbiD | 3339749 | p.Val211Gly | missense_variant | 0.2 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568428 | c.252A>G | synonymous_variant | 0.31 |
whiB7 | 3568431 | c.249C>G | synonymous_variant | 0.26 |
rpoA | 3878613 | c.-106A>C | upstream_gene_variant | 0.25 |
rpoA | 3878641 | c.-134C>G | upstream_gene_variant | 0.86 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
embC | 4240409 | p.Pro183Ala | missense_variant | 0.26 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246527 | p.Ala5Gly | missense_variant | 0.26 |
embB | 4246529 | p.Ser6Arg | missense_variant | 0.35 |
embB | 4246584 | p.Arg24Pro | missense_variant | 0.17 |
embB | 4248328 | c.1815G>C | synonymous_variant | 0.18 |
aftB | 4268680 | p.Glu53Gln | missense_variant | 1.0 |
ethA | 4327472 | c.2T>C | start_lost | 0.99 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407720 | c.483C>G | synonymous_variant | 1.0 |
gid | 4408014 | p.Asp63Glu | missense_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |