Run ID: SRR1657065
Sample name:
Date: 03-04-2023 17:43:57
Number of reads: 357826
Percentage reads mapped: 99.53
Strain: La1.8.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
La1 | M.bovis | None | None | 1.0 |
La1.8 | M.bovis | None | None | 1.0 |
La1.8.1 | M.bovis | None | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
pncA | 2289073 | p.His57Asp | missense_variant | 1.0 | pyrazinamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5752 | c.513G>A | synonymous_variant | 1.0 |
gyrA | 6406 | c.-896C>T | upstream_gene_variant | 1.0 |
gyrB | 6446 | p.Ala403Ser | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8285 | c.984C>T | synonymous_variant | 1.0 |
gyrA | 8405 | c.1104C>T | synonymous_variant | 0.18 |
gyrA | 9143 | c.1842T>C | synonymous_variant | 1.0 |
gyrA | 9217 | p.Asp639Ala | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491014 | p.Thr78Pro | missense_variant | 0.25 |
fgd1 | 491417 | p.Arg212Leu | missense_variant | 0.12 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 576514 | c.1167G>A | synonymous_variant | 0.12 |
mshA | 576724 | c.1377G>A | synonymous_variant | 0.18 |
mshA | 576750 | p.Lys468Thr | missense_variant | 0.17 |
rpoB | 759620 | c.-187A>C | upstream_gene_variant | 0.27 |
rpoB | 760787 | c.981G>A | synonymous_variant | 0.22 |
rpoB | 761449 | p.Phe548Cys | missense_variant | 0.4 |
rpoB | 762499 | c.2694delG | frameshift_variant | 0.17 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 766994 | p.Gly1209Ser | missense_variant | 0.25 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776260 | p.Ala741Thr | missense_variant | 0.12 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rplC | 800790 | c.-19T>C | upstream_gene_variant | 0.2 |
rplC | 801287 | p.Val160Gly | missense_variant | 0.14 |
fbiC | 1302899 | c.-32A>G | upstream_gene_variant | 1.0 |
fbiC | 1303016 | p.Val29Gly | missense_variant | 0.22 |
fbiC | 1303023 | c.93A>C | synonymous_variant | 0.2 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472599 | n.754G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476338 | n.2681C>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476682 | n.3025C>A | non_coding_transcript_exon_variant | 0.14 |
inhA | 1674123 | c.-79T>C | upstream_gene_variant | 0.2 |
rpsA | 1834859 | p.Ala440Thr | missense_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102738 | p.Glu102Gly | missense_variant | 1.0 |
ndh | 2103173 | c.-132delG | upstream_gene_variant | 1.0 |
katG | 2154643 | p.Gly490Asp | missense_variant | 0.2 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155503 | c.609C>T | synonymous_variant | 1.0 |
katG | 2155894 | p.Val73Ala | missense_variant | 1.0 |
katG | 2156025 | c.87C>A | synonymous_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168011 | p.Ser868Arg | missense_variant | 1.0 |
PPE35 | 2168319 | p.Thr765Ile | missense_variant | 1.0 |
PPE35 | 2168814 | c.1798dupA | frameshift_variant | 1.0 |
PPE35 | 2168872 | p.Leu581Met | missense_variant | 0.13 |
PPE35 | 2169933 | p.Ile227Asn | missense_variant | 0.23 |
PPE35 | 2170560 | p.Gly18Glu | missense_variant | 0.13 |
Rv1979c | 2222308 | p.Asp286Gly | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518132 | c.18C>T | synonymous_variant | 1.0 |
eis | 2715125 | p.Thr70Ala | missense_variant | 1.0 |
ribD | 2987056 | p.Leu73Pro | missense_variant | 0.18 |
ald | 3086728 | c.-92C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087084 | c.266delA | frameshift_variant | 1.0 |
Rv3083 | 3448783 | p.Val94Ile | missense_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474427 | p.Val141Ile | missense_variant | 1.0 |
fprA | 3475159 | p.Asn385Asp | missense_variant | 1.0 |
whiB7 | 3568666 | p.Thr5Ile | missense_variant | 0.22 |
Rv3236c | 3612835 | c.282T>G | synonymous_variant | 0.4 |
Rv3236c | 3613247 | c.-131C>T | upstream_gene_variant | 1.0 |
fbiA | 3640429 | c.-114C>T | upstream_gene_variant | 1.0 |
fbiB | 3641028 | c.-507A>G | upstream_gene_variant | 0.18 |
rpoA | 3878630 | c.-124delC | upstream_gene_variant | 1.0 |
clpC1 | 4038403 | c.2302T>C | synonymous_variant | 1.0 |
clpC1 | 4040668 | p.Val13Ile | missense_variant | 0.18 |
embC | 4239685 | c.-178G>T | upstream_gene_variant | 0.17 |
embC | 4240671 | p.Thr270Ile | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4242970 | c.-263C>T | upstream_gene_variant | 1.0 |
embA | 4244220 | c.988C>T | synonymous_variant | 1.0 |
embB | 4246551 | p.Asn13Ser | missense_variant | 1.0 |
embB | 4246864 | c.351C>T | synonymous_variant | 1.0 |
embB | 4247646 | p.Glu378Ala | missense_variant | 1.0 |
embB | 4249754 | p.Gly1081Cys | missense_variant | 0.18 |
aftB | 4267858 | p.Ile327Val | missense_variant | 1.0 |
aftB | 4268844 | c.-8A>G | upstream_gene_variant | 1.0 |
aftB | 4269351 | c.-515C>T | upstream_gene_variant | 1.0 |
ubiA | 4269387 | p.Glu149Asp | missense_variant | 1.0 |
aftB | 4269606 | c.-770T>C | upstream_gene_variant | 1.0 |
ethA | 4328196 | c.-723G>C | upstream_gene_variant | 1.0 |
ethA | 4328312 | c.-839C>A | upstream_gene_variant | 0.2 |
whiB6 | 4338219 | c.303C>T | synonymous_variant | 0.15 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |