Run ID: SRR2101502
Sample name:
Date: 03-04-2023 23:45:21
Number of reads: 653461
Percentage reads mapped: 98.72
Strain: lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 0.98 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 0.98 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 0.98 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 0.91 |
ccsA | 620449 | p.Leu187Met | missense_variant | 0.12 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303538 | p.Arg203Leu | missense_variant | 0.13 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
embR | 1416989 | c.358delA | frameshift_variant | 0.13 |
atpE | 1461236 | c.194delT | frameshift_variant | 0.11 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476301 | n.2644A>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.11 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.1 |
inhA | 1673538 | c.-664G>A | upstream_gene_variant | 0.11 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2169760 | p.Gly285Cys | missense_variant | 0.13 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2290110 | c.-869C>T | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475223 | p.Val406Gly | missense_variant | 0.11 |
whiB7 | 3568800 | c.-121C>A | upstream_gene_variant | 0.13 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 0.9 |
fbiB | 3641890 | p.Ala119Val | missense_variant | 0.11 |
fbiB | 3642130 | p.Ala199Asp | missense_variant | 0.15 |
embC | 4240624 | c.762C>A | synonymous_variant | 0.12 |
embC | 4242209 | p.Glu783Lys | missense_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embA | 4243669 | p.Gly146Asp | missense_variant | 0.12 |
embA | 4244184 | p.Ser318Cys | missense_variant | 0.11 |
embB | 4246481 | c.-33C>A | upstream_gene_variant | 0.18 |
embB | 4246567 | c.54G>T | synonymous_variant | 1.0 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
ethR | 4327006 | c.-543A>G | upstream_gene_variant | 0.15 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 0.96 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |