Run ID: SRR21277777
Sample name:
Date: 04-04-2023 01:40:49
Number of reads: 16204440
Percentage reads mapped: 97.61
Strain: lineage4.2.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.2 | Euro-American | H;T;LAM | None | 1.0 |
lineage4.2.2 | Euro-American (Ural) | T;LAM7-TUR | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576077 | c.730C>T | synonymous_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2155747 | p.Ala122Val | missense_variant | 0.11 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
folC | 2746334 | p.Gly422Val | missense_variant | 0.2 |
folC | 2746342 | c.1257G>A | synonymous_variant | 0.11 |
pepQ | 2860178 | p.Arg81Cys | missense_variant | 0.11 |
pepQ | 2860189 | p.Arg77His | missense_variant | 0.1 |
pepQ | 2860589 | c.-171G>T | upstream_gene_variant | 0.18 |
Rv2752c | 3066280 | c.-89C>T | upstream_gene_variant | 1.0 |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339618 | c.501C>A | synonymous_variant | 0.2 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612469 | c.648A>G | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4244553 | p.Gln441Lys | missense_variant | 0.17 |
embA | 4244574 | p.Ala448Ser | missense_variant | 0.15 |
embA | 4244876 | c.1644G>A | synonymous_variant | 1.0 |
embB | 4246753 | c.240C>A | synonymous_variant | 0.11 |
ethR | 4327618 | p.Asp24Tyr | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |