Rv1979c - c.-669_-607delTGGAAAATTACATCGCCCAGACGCGCGACAAGTTCCTCAGCGCGGCCACATCGTCCACTCCAC

Drug resistance types
220 Sensitive 9 RR-TB 54 HR-TB 86 MDR-TB 22 Pre-XDR-TB 0 XDR-TB 13 Other
lineage Counts
lineage Count
lineage4.2.2 400
lineage2.2.1;lineage4.2.2 4
spoligotype Counts
spoligotype Count
None 404
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR25628592 MDR-TB lineage4.2.2 None
ERR13291154 HR-TB lineage4.2.2 None
SRR8651657 MDR-TB lineage4.2.2 cn
SRR8651657 MDR-TB lineage4.2.2 cn
ERR3559274 HR-TB lineage4.2.2 None
ERR4811333 MDR-TB lineage4.2.2 cn
DRR184936 Sensitive lineage4.2.2 vn
SRR21277855 HR-TB lineage4.2.2 None
ERR3559278 HR-TB lineage4.2.2 None
ERR3559304 HR-TB lineage4.2.2 None
ERR11050450 Sensitive lineage4.2.2 None
ERR4810615 Sensitive lineage4.2.2 cn
SRR15368780 Sensitive lineage4.2.2 None
SRR15368808 Sensitive lineage4.2.2 None
SRR21031757 Sensitive lineage4.2.2 None
SRR21279415 Sensitive lineage4.2.2 None
SRR18002994 MDR-TB lineage4.2.2 None
SRR20969452 MDR-TB lineage4.2.2 None
SRR25515219 Sensitive lineage4.2.2 None
ERR4811083 Sensitive lineage4.2.2 cn
SRR26400037 Sensitive lineage4.2.2 None
ERR3559286 HR-TB lineage4.2.2 None
SRR11662499 MDR-TB lineage4.2.2 None
SRR15723116 Sensitive lineage4.2.2 None
SRR18003017 MDR-TB lineage4.2.2 None
ERR3559284 HR-TB lineage4.2.2 None
ERR4811044 Sensitive lineage4.2.2 cn
ERR4811279 Sensitive lineage4.2.2 cn
ERR3559302 HR-TB lineage4.2.2 None
SRR25206875 Sensitive lineage4.2.2 None
ERR2179742 Sensitive lineage4.2.2 cn
SRR11662222 MDR-TB lineage4.2.2 None
SRR21711110 Sensitive lineage4.2.2 None
SRR22249913 Sensitive lineage4.2.2 None
SRR27069420 Pre-XDR-TB lineage4.2.2 None
SRR6824554 Sensitive lineage4.2.2 cn
SRR21887716 MDR-TB lineage4.2.2 None
SRR11662312 MDR-TB lineage4.2.2 None
SRR15368976 Sensitive lineage4.2.2 None
SRR21576546 RR-TB lineage4.2.2 None
SRR25534235 Sensitive lineage4.2.2 None
SRR10040191 RR-TB lineage4.2.2 None
SRR15315760 Sensitive lineage4.2.2 None
SRR20970007 HR-TB lineage4.2.2 None
SRR5067281 HR-TB lineage4.2.2 vn
ERR4810611 Other lineage4.2.2 cn
SRR21277201 Sensitive lineage4.2.2 None
SRR21291116 Sensitive lineage4.2.2 None
SRR21733121 Sensitive lineage4.2.2 None
SRR25207350 MDR-TB lineage4.2.2 None
ERR4811506 Sensitive lineage4.2.2 cn
ERR4811596 Sensitive lineage4.2.2 cn
SRR16103895 RR-TB lineage4.2.2 None
SRR21277773 Sensitive lineage4.2.2 None
SRR21279447 Sensitive lineage4.2.2 None
SRR5065225 Sensitive lineage4.2.2 vn
SRR10230353 Sensitive lineage4.2.2 None
SRR22250169 Sensitive lineage4.2.2 None
SRR21277332 Other lineage4.2.2 None
SRR25207082 Pre-XDR-TB lineage4.2.2 None
SRR25628588 HR-TB lineage4.2.2 None
DRR184995 Sensitive lineage4.2.2 vn
SRR21279429 Sensitive lineage4.2.2 None
SRR27450175 Sensitive lineage4.2.2 None
SRR5073960 Sensitive lineage4.2.2 vn
SRR25207237 Pre-XDR-TB lineage4.2.2 None
SRR15316263 Sensitive lineage4.2.2 None
SRR10040468 MDR-TB lineage4.2.2 None
ERR4811184 Pre-XDR-TB lineage4.2.2 cn
SRR26399882 Other lineage4.2.2 None
SRR10333499 Sensitive lineage4.2.2 None
SRR25207357 Pre-XDR-TB lineage4.2.2 None
ERR2179723 Sensitive lineage4.2.2 cn
SRR11662415 MDR-TB lineage4.2.2 None
SRR21277659 Sensitive lineage4.2.2 None
SRR5065276 HR-TB lineage4.2.2 vn
SRR5065690 Sensitive lineage4.2.2 vn
SRR25534434 Other lineage4.2.2 None
SRR15316093 Sensitive lineage4.2.2 None
SRR12142386 Sensitive lineage4.2.2 None
SRR20969397 Sensitive lineage4.2.2 None
SRR5073711 Sensitive lineage4.2.2 vn
SRR20969960 Sensitive lineage4.2.2 None
SRR20970033 Sensitive lineage4.2.2 None
ERR4811597 Sensitive lineage4.2.2 cn
SRR21276976 Sensitive lineage4.2.2 None
SRR21277074 Sensitive lineage4.2.2 None
SRR21663286 HR-TB lineage4.2.2 None
SRR15368909 Sensitive lineage4.2.2 None
SRR20969821 HR-TB lineage4.2.2 None
SRR21746998 MDR-TB lineage4.2.2 None
SRR25207175 Pre-XDR-TB lineage4.2.2 None
SRR17687535 Sensitive lineage4.2.2 None
SRR21277836 Other lineage4.2.2 None
SRR26937101 MDR-TB lineage4.2.2 None
SRR10040402 MDR-TB lineage4.2.2 None
ERR4811507 Sensitive lineage4.2.2 cn
ERR13193757 MDR-TB lineage4.2.2 None
ERR3559307 HR-TB lineage4.2.2 None
SRR6824359 MDR-TB lineage4.2.2 cn
SRR6824339 MDR-TB lineage2.2.1;lineage4.2.2 cn
SRR15368853 Sensitive lineage4.2.2 None
SRR20969567 Sensitive lineage4.2.2 None
SRR20632792 MDR-TB lineage4.2.2 None
SRR15368848 Sensitive lineage4.2.2 None
ERR4811032 Sensitive lineage4.2.2 cn
SRR20969690 Sensitive lineage4.2.2 None
SRR25207320 Pre-XDR-TB lineage4.2.2 None
ERR2179743 RR-TB lineage4.2.2 cn
SRR25207156 MDR-TB lineage4.2.2 None
ERR4810910 Sensitive lineage4.2.2 cn
SRR15368713 Sensitive lineage4.2.2 None
SRR21732664 Sensitive lineage4.2.2 None
SRR25515207 Sensitive lineage4.2.2 None
DRR184927 Sensitive lineage4.2.2 vn
SRR11662236 MDR-TB lineage4.2.2 None
ERR4811586 Sensitive lineage4.2.2 cn
SRR15315942 Sensitive lineage4.2.2 None
SRR10040458 Sensitive lineage4.2.2 None
ERR4811258 Sensitive lineage4.2.2 cn
SRR21277197 Other lineage4.2.2 None
DRR261041 Sensitive lineage4.2.2 None
ERR2179735 RR-TB lineage4.2.2 cn
DRR184973 Sensitive lineage4.2.2 vn
ERR3559295 HR-TB lineage4.2.2 None
SRR11662362 Pre-XDR-TB lineage4.2.2 None
SRR25207021 MDR-TB lineage4.2.2 None
SRR25207021 MDR-TB lineage4.2.2 None
ERR13252240 MDR-TB lineage4.2.2 None
SRR30182889 Sensitive lineage4.2.2 None
SRR30182889 Sensitive lineage4.2.2 None
ERR4811164 Sensitive lineage4.2.2 cn
ERR4811206 Sensitive lineage4.2.2 cn
SRR15723104 Sensitive lineage4.2.2 None
SRR21722113 Sensitive lineage4.2.2 None
ERR2020068 Sensitive lineage4.2.2 None
SRR17732465 Sensitive lineage4.2.2 None
SRR21277042 Sensitive lineage4.2.2 None
ERR13291692 Sensitive lineage4.2.2 None
SRR29440821 Sensitive lineage4.2.2 None
SRR29440821 Sensitive lineage4.2.2 None
SRR15316157 Sensitive lineage4.2.2 None
SRR15316227 Sensitive lineage4.2.2 None
SRR15316421 MDR-TB lineage4.2.2 None
SRR18549037 Sensitive lineage4.2.2 None
SRR21732252 Sensitive lineage4.2.2 None
DRR184679 Sensitive lineage4.2.2 vn
DRR185051 Sensitive lineage4.2.2 vn
SRR5067435 MDR-TB lineage4.2.2 vn
ERR4811247 Sensitive lineage4.2.2 None
ERR4815859 Sensitive lineage4.2.2 gb
SRR25515062 Sensitive lineage4.2.2 None
SRR15316134 Sensitive lineage4.2.2 None
SRR15368852 MDR-TB lineage4.2.2 None
SRR26400013 Sensitive lineage4.2.2 None
SRR20969373 Sensitive lineage4.2.2 None
SRR25515415 Sensitive lineage4.2.2 None
SRR5065335 Sensitive lineage4.2.2 vn
ERR3559281 HR-TB lineage4.2.2 None
SRR15368841 HR-TB lineage4.2.2 None
ERR4810935 Sensitive lineage4.2.2 cn
ERR4810936 Sensitive lineage4.2.2 cn
DRR184925 Sensitive lineage4.2.2 vn
SRR10040459 Pre-XDR-TB lineage4.2.2 None
ERR4810952 Pre-XDR-TB lineage4.2.2 cn
ERR4810788 Sensitive lineage4.2.2 cn
ERR4810958 MDR-TB lineage4.2.2 cn
SRR15368880 Sensitive lineage4.2.2 None
SRR25207059 MDR-TB lineage4.2.2 None
SRR25207203 Pre-XDR-TB lineage4.2.2 None
SRR24827283 Pre-XDR-TB lineage4.2.2 None
SRR15316386 Sensitive lineage4.2.2 None
ERR2179712 Sensitive lineage4.2.2 cn
SRR21662821 Sensitive lineage4.2.2 None
SRR18548995 Sensitive lineage4.2.2 None
SRR25206862 MDR-TB lineage4.2.2 None
ERR4811375 Sensitive lineage4.2.2 None
DRR184910 Sensitive lineage4.2.2 vn
SRR5709781 MDR-TB lineage4.2.2 th
SRR15316397 MDR-TB lineage4.2.2 None
SRR6824409 MDR-TB lineage4.2.2 cn
SRR6824338 RR-TB lineage4.2.2 cn
SRR6824397 Sensitive lineage4.2.2 cn
SRR6280330 Sensitive lineage4.2.2 cn
SRR25207363 MDR-TB lineage4.2.2 None
SRR27450372 HR-TB lineage4.2.2 None
SRR15315814 Sensitive lineage4.2.2 None
SRR15368912 Sensitive lineage4.2.2 None
SRR6824695 MDR-TB lineage4.2.2 cn
ERR4811340 Sensitive lineage4.2.2 cn
SRR27069416 MDR-TB lineage4.2.2 None
SRR25207132 MDR-TB lineage4.2.2 None
SRR11662458 MDR-TB lineage4.2.2 None
SRR15316598 Sensitive lineage4.2.2 None
SRR6824480 MDR-TB lineage4.2.2 cn
ERR4811121 Sensitive lineage4.2.2 cn
SRR25628587 HR-TB lineage4.2.2 None
ERR4811159 RR-TB lineage4.2.2 cn
ERR2179739 Sensitive lineage4.2.2 cn
SRR26937126 HR-TB lineage4.2.2 None
ERR3559277 HR-TB lineage4.2.2 None
SRR6824405 MDR-TB lineage4.2.2 cn
ERR3559298 HR-TB lineage4.2.2 None
SRR6824597 MDR-TB lineage4.2.2 cn
SRR22249702 Sensitive lineage4.2.2 None
SRR25207385 Sensitive lineage4.2.2 None
SRR26112641 Other lineage4.2.2 None
SRR10040391 MDR-TB lineage4.2.2 None
ERR13291079 HR-TB lineage4.2.2 None
DRR184950 Sensitive lineage4.2.2 vn
SRR26399532 Sensitive lineage4.2.2 None
ERR4821431 Sensitive lineage4.2.2 None
SRR17703710 Sensitive lineage4.2.2 None
SRR21277032 Sensitive lineage4.2.2 None
SRR10040154 MDR-TB lineage2.2.1;lineage4.2.2 None
SRR15369054 Sensitive lineage4.2.2 None
SRR15316116 Sensitive lineage4.2.2 None
ERR4810646 Sensitive lineage4.2.2 cn
SRR26558643 HR-TB lineage4.2.2 None
SRR15723048 Sensitive lineage4.2.2 None
ERR4811325 Pre-XDR-TB lineage4.2.2 cn
SRR14519742 HR-TB lineage4.2.2 None
ERR3559297 HR-TB lineage4.2.2 None
SRR15316060 Sensitive lineage4.2.2 None
SRR18511615 Sensitive lineage4.2.2 None
SRR21887703 MDR-TB lineage4.2.2 None
DRR185052 Sensitive lineage4.2.2 vn
SRR25207384 Sensitive lineage4.2.2 None
SRR10333502 Sensitive lineage4.2.2 None
SRR10040265 MDR-TB lineage4.2.2 None
DRR184975 Sensitive lineage4.2.2 vn
ERR3132297 Other lineage4.2.2 None
SRR10040438 MDR-TB lineage2.2.1;lineage4.2.2 None
DRR185012 HR-TB lineage4.2.2 vn
SRR15723050 Sensitive lineage4.2.2 None
SRR20969422 MDR-TB lineage4.2.2 None
SRR20969744 Pre-XDR-TB lineage4.2.2 None
SRR25206866 MDR-TB lineage4.2.2 None
SRR25206933 MDR-TB lineage4.2.2 None
SRR11662576 MDR-TB lineage4.2.2 None
SRR29914416 MDR-TB lineage4.2.2 None
SRR29914416 MDR-TB lineage4.2.2 None
SRR30182738 Sensitive lineage4.2.2 None
ERR13291069 HR-TB lineage4.2.2 None
SRR30340073 Sensitive lineage4.2.2 None
SRR30340073 Sensitive lineage4.2.2 None
SRR30180293 MDR-TB lineage4.2.2 None
SRR30180293 MDR-TB lineage4.2.2 None
SRR20970018 Sensitive lineage4.2.2 None
ERR4810537 Sensitive lineage4.2.2 cn
SRR10040383 MDR-TB lineage4.2.2 None
DRR184933 Sensitive lineage4.2.2 vn
SRR6824678 RR-TB lineage4.2.2 cn
SRR25515084 Sensitive lineage4.2.2 None
ERR13291157 HR-TB lineage4.2.2 None
ERR13291157 HR-TB lineage4.2.2 None
ERR7361944 Sensitive lineage4.2.2 None
SRR18511604 Sensitive lineage4.2.2 None
ERR4811338 MDR-TB lineage4.2.2 cn
DRR184658 HR-TB lineage4.2.2 vn
SRR18548986 Sensitive lineage4.2.2 None
SRR30182883 HR-TB lineage4.2.2 None
SRR30182883 HR-TB lineage4.2.2 None
SRR10333496 Sensitive lineage4.2.2 None
SRR20969537 Sensitive lineage4.2.2 None
ERR4811576 Sensitive lineage4.2.2 cn
SRR29052941 Sensitive lineage4.2.2 None
SRR20632784 MDR-TB lineage4.2.2 None
SRR15368942 Sensitive lineage4.2.2 None
SRR16370547 MDR-TB lineage4.2.2 None
SRR20969577 Sensitive lineage4.2.2 None
SRR26399172 HR-TB lineage4.2.2 None
SRR10333498 Sensitive lineage4.2.2 None
SRR21031726 Sensitive lineage4.2.2 None
SRR15368926 Sensitive lineage4.2.2 None
SRR21277458 Sensitive lineage4.2.2 None
SRR10333500 Sensitive lineage4.2.2 None
ERR4811583 Sensitive lineage4.2.2 cn
SRR15315863 Sensitive lineage4.2.2 None
SRR10040356 Pre-XDR-TB lineage4.2.2 None
SRR12062501 MDR-TB lineage4.2.2 None
ERR4810663 Sensitive lineage4.2.2 cn
SRR25206868 MDR-TB lineage4.2.2 None
SRR15722998 Pre-XDR-TB lineage4.2.2 None
SRR20969777 MDR-TB lineage4.2.2 None
ERR7911325 MDR-TB lineage4.2.2 vn
SRR26399243 Sensitive lineage2.2.1;lineage4.2.2 None
ERR4810807 Sensitive lineage4.2.2 cn
SRR15368718 Sensitive lineage4.2.2 None
ERR3559287 HR-TB lineage4.2.2 None
DRR184881 Sensitive lineage4.2.2 vn
ERR4811092 Sensitive lineage4.2.2 cn
SRR5065578 HR-TB lineage4.2.2 vn
SRR5067621 Sensitive lineage4.2.2 vn
ERR13245219 MDR-TB lineage4.2.2 None
ERR4810514 Sensitive lineage4.2.2 cn
SRR25206869 MDR-TB lineage4.2.2 None
SRR25207368 Pre-XDR-TB lineage4.2.2 None
SRR25207340 MDR-TB lineage4.2.2 None
SRR21277076 Sensitive lineage4.2.2 None
SRR21277777 Sensitive lineage4.2.2 None
SRR22249748 Sensitive lineage4.2.2 None
ERR3559279 HR-TB lineage4.2.2 None
ERR4811165 Sensitive lineage4.2.2 cn
SRR22249986 Sensitive lineage4.2.2 None
DRR184630 HR-TB lineage4.2.2 vn
DRR261022 Sensitive lineage4.2.2 None
SRR26112341 Sensitive lineage4.2.2 None
ERR4811224 Sensitive lineage4.2.2 cn
SRR15723231 HR-TB lineage4.2.2 None
SRR15368893 HR-TB lineage4.2.2 None
SRR5067577 Sensitive lineage4.2.2 vn
SRR26399631 Other lineage4.2.2 None
ERR4811494 HR-TB lineage4.2.2 cn
SRR21277686 Sensitive lineage4.2.2 None
SRR25206867 MDR-TB lineage4.2.2 None
ERR4811362 Pre-XDR-TB lineage4.2.2 cn
SRR10333495 Sensitive lineage4.2.2 None
SRR25534591 Sensitive lineage4.2.2 None
SRR15316285 Sensitive lineage4.2.2 None
SRR17703715 Sensitive lineage4.2.2 None
SRR5067274 HR-TB lineage4.2.2 vn
SRR8217896 Sensitive lineage4.2.2 None
ERR4810979 Pre-XDR-TB lineage4.2.2 cn
DRR184661 HR-TB lineage4.2.2 vn
DRR185006 Sensitive lineage4.2.2 vn
SRR25206988 MDR-TB lineage4.2.2 None
SRR15369038 Sensitive lineage4.2.2 None
SRR25628591 MDR-TB lineage4.2.2 None
ERR3559283 HR-TB lineage4.2.2 None
SRR5073770 Sensitive lineage4.2.2 vn
SRR15316236 Sensitive lineage4.2.2 None
SRR17712077 Sensitive lineage4.2.2 None
SRR21576613 MDR-TB lineage4.2.2 None
ERR3559280 HR-TB lineage4.2.2 None
SRR25207214 MDR-TB lineage4.2.2 None
DRR261103 Sensitive lineage4.2.2 None
SRR25206928 MDR-TB lineage4.2.2 None
SRR10333501 Sensitive lineage4.2.2 None
SRR10333504 Sensitive lineage4.2.2 None
SRR20969414 MDR-TB lineage4.2.2 None
SRR29914418 MDR-TB lineage4.2.2 None
SRR29914418 MDR-TB lineage4.2.2 None
SRR15722974 Sensitive lineage4.2.2 None
SRR20969929 Sensitive lineage4.2.2 None
SRR18511602 Sensitive lineage4.2.2 None
SRR5073623 Other lineage4.2.2 vn
SRR10040517 MDR-TB lineage4.2.2 None
SRR18912541 Sensitive lineage4.2.2 None
SRR15316270 Sensitive lineage4.2.2 None
ERR4811253 Sensitive lineage4.2.2 cn
SRR25206865 MDR-TB lineage4.2.2 None
SRR15316575 Sensitive lineage4.2.2 None
SRR11662441 MDR-TB lineage4.2.2 None
ERR4811107 Sensitive lineage4.2.2 cn
SRR20970048 Other lineage4.2.2 None
SRR5073516 HR-TB lineage4.2.2 vn
ERR3132098 MDR-TB lineage4.2.2 None
SRR16115071 Pre-XDR-TB lineage4.2.2 None
SRR15368911 Sensitive lineage4.2.2 None
SRR21277547 Sensitive lineage4.2.2 None
ERR2179692 Sensitive lineage4.2.2 cn
ERR3287617 HR-TB lineage4.2.2 pe
SRR15316453 Sensitive lineage4.2.2 None
SRR21277239 Sensitive lineage4.2.2 None
SRR25207344 MDR-TB lineage4.2.2 None
ERR4811007 Sensitive lineage4.2.2 cn
ERR4811313 MDR-TB lineage4.2.2 cn
SRR21733315 Sensitive lineage4.2.2 None
SRR22249976 Sensitive lineage4.2.2 None
SRR15368850 Sensitive lineage4.2.2 None
ERR3559292 HR-TB lineage4.2.2 None
ERR3561760 HR-TB lineage4.2.2 None
SRR15369045 HR-TB lineage4.2.2 None
SRR19612259 Sensitive lineage4.2.2 None
ERR4810725 Sensitive lineage4.2.2 cn
ERR4811319 MDR-TB lineage4.2.2 cn
SRR15316064 Sensitive lineage4.2.2 None
SRR18914188 Other lineage4.2.2 None
SRR15316321 Sensitive lineage4.2.2 None
SRR15369049 Sensitive lineage4.2.2 None
ERR3559296 HR-TB lineage4.2.2 None
ERR4810465 MDR-TB lineage4.2.2 cn
ERR4811223 Sensitive lineage4.2.2 None
SRR6824325 Sensitive lineage4.2.2 cn
SRR21277309 Sensitive lineage4.2.2 None
DRR261129 Sensitive lineage4.2.2 None
SRR25515420 Other lineage4.2.2 None
ERR3559275 HR-TB lineage4.2.2 None
ERR4810906 Sensitive lineage4.2.2 cn
SRR24827280 RR-TB lineage4.2.2 None
SRR15368979 Sensitive lineage4.2.2 None
ERR3559301 HR-TB lineage4.2.2 None
SRR10040142 MDR-TB lineage4.2.2 None
SRR21279463 Sensitive lineage4.2.2 None
ERR2179734 Sensitive lineage4.2.2 cn
ERR2179803 Sensitive lineage4.2.2 cn
SRR29440884 Sensitive lineage4.2.2 None
SRR29440884 Sensitive lineage4.2.2 None
SRR15369063 Pre-XDR-TB lineage4.2.2 None
ERR4811347 MDR-TB lineage4.2.2 cn
ERR4811161 Pre-XDR-TB lineage4.2.2 cn
SRR28409503 Sensitive lineage4.2.2 None
SRR5073978 Sensitive lineage4.2.2 vn