Run ID: SRR21279348
Sample name:
Date: 04-04-2023 01:53:05
Number of reads: 12268536
Percentage reads mapped: 96.78
Strain: lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575278 | c.-70C>T | upstream_gene_variant | 0.33 |
ccsA | 620625 | p.Ile245Met | missense_variant | 0.98 |
rpoB | 761675 | c.1869G>T | synonymous_variant | 0.11 |
rpoC | 762680 | c.-690C>A | upstream_gene_variant | 0.17 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 766983 | p.Pro1205Leu | missense_variant | 0.2 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303129 | p.Asp67Tyr | missense_variant | 0.29 |
fbiC | 1304329 | p.Ala467Thr | missense_variant | 0.11 |
fbiC | 1305204 | c.2274C>A | synonymous_variant | 0.99 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1918537 | p.Asp200Asn | missense_variant | 0.12 |
tlyA | 1918547 | p.Leu203* | stop_gained | 0.12 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155772 | p.Arg114Cys | missense_variant | 0.29 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2170003 | p.Ala204Thr | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2519350 | c.1236C>G | synonymous_variant | 0.98 |
folC | 2746379 | p.Gly407Lys | missense_variant | 0.2 |
pepQ | 2860229 | p.Ala64Thr | missense_variant | 0.15 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3475298 | p.Arg431Gln | missense_variant | 0.12 |
whiB7 | 3568641 | c.27_38dupGACCCCCAGACA | disruptive_inframe_insertion | 0.97 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
ddn | 3986770 | c.-74C>A | upstream_gene_variant | 1.0 |
embC | 4240510 | c.648G>T | synonymous_variant | 0.22 |
embC | 4240643 | p.Arg261Trp | missense_variant | 0.18 |
embC | 4240648 | c.786C>T | synonymous_variant | 0.1 |
embC | 4241239 | c.1377C>T | synonymous_variant | 0.11 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embB | 4247673 | p.Ala387Val | missense_variant | 0.11 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 0.92 |
ubiA | 4269989 | c.-156G>A | upstream_gene_variant | 0.96 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |