Run ID: SRR21700925
Sample name:
Date: 12-03-2024 20:34:42
Number of reads: 8302885
Percentage reads mapped: 99.97
Strain: lineage4.9
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | R | embA c.-16C>T (0.23), embA c.-12C>T (0.24), embB p.Gln497Lys (1.00) |
Pyrazinamide | ||
Streptomycin | ||
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
embA | 4243217 | c.-16C>T | upstream_gene_variant | 0.23 | ethambutol |
embA | 4243221 | c.-12C>T | upstream_gene_variant | 0.24 | ethambutol |
embB | 4248002 | p.Gln497Lys | missense_variant | 1.0 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
Rv1258c | 1406686 | p.Val219Ile | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
embB | 4247028 | p.Leu172Arg | missense_variant | 0.14 |
embB | 4247039 | p.Phe176Val | missense_variant | 0.14 |
ubiA | 4269721 | p.Ala38Val | missense_variant | 0.99 |