Run ID: SRR21700925
Sample name:
Date: 2025-03-05T00:40:42.813143
Number of reads: 8300949
Percentage reads mapped: 99.97
Median coverage: 283.0
Strain: lineage4.9
Spoligotype:
Drug-resistance: Other
Lineage | Family | RDs | Frequency |
---|---|---|---|
lineage4 | Euro-American | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | None | 1.0 |
Drug | Resistance | Supporting mutations | WHO confidence | Comment |
---|---|---|---|---|
rifampicin | ||||
isoniazid | ||||
ethambutol | embA | c.-16C>T | Uncertain significance | Mutation from literature |
c.-12C>T | Uncertain significance | Mutation from literature: doi: 10.1128/AAC.03285-14 | ||
embB | p.Gln497Lys | Assoc w R | ||
pyrazinamide | ||||
streptomycin | ||||
fluoroquinolones | ||||
moxifloxacin | ||||
ofloxacin | ||||
levofloxacin | ||||
ciprofloxacin | ||||
aminoglycosides | ||||
amikacin | ||||
capreomycin | ||||
kanamycin | ||||
cycloserine | ||||
ethionamide | ||||
clofazimine | ||||
para-aminosalicylic_acid | ||||
delamanid | ||||
bedaquiline | ||||
linezolid |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence | Comment |
---|---|---|---|---|---|---|---|
embA | 4243217 | c.-16C>T | upstream_gene_variant | 0.23 | ethambutol | Uncertain significance | Mutation from literature |
embA | 4243221 | c.-12C>T | upstream_gene_variant | 0.24 | ethambutol | Uncertain significance | Mutation from literature: doi: 10.1128/AAC.03285-14 |
embB | 4248002 | p.Gln497Lys | missense_variant | 1.0 | ethambutol | Assoc w R |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs | Confidence |
---|---|---|---|---|---|---|
Rv1258c | 1406686 | p.Val219Ile | missense_variant | 1.0 | isoniazid | Uncertain significance |
pyrazinamide | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 | amikacin | Uncertain significance |
capreomycin | Uncertain significance | |||||
kanamycin | Uncertain significance | |||||
streptomycin | Uncertain significance | |||||
embB | 4247028 | p.Leu172Arg | missense_variant | 0.14 | ethambutol | Uncertain significance |
embB | 4247039 | p.Phe176Val | missense_variant | 0.14 | ethambutol | Uncertain significance |
ubiA | 4269721 | p.Ala38Val | missense_variant | 0.99 | ethambutol | Uncertain significance |