Rv3806c - p.Ala38Val
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
5 Sensitive
0 RR-TB
5 HR-TB
104 MDR-TB
33 Pre-XDR-TB
3 XDR-TB
19 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.6.1.2 | 2 |
| lineage4.2.1 | 49 |
| lineage2.2.1;lineage4.2.1 | 5 |
| lineage4.8 | 2 |
| lineage3.1.1 | 2 |
| lineage2.2.2 | 1 |
| lineage4.3.3 | 3 |
| lineage4.4.1.1 | 1 |
| lineage4.1.2.1 | 27 |
| lineage2.2.1.1 | 3 |
| lineage4.9 | 21 |
| lineage4.3.4.1;lineage4.9 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.3.4.1 | 10 |
| lineage4.4.1.1.1 | 7 |
| lineage3.1.2.1 | 2 |
| lineage4.5 | 1 |
| lineage4.3 | 5 |
| lineage1.2.2.2 | 1 |
| lineage2.2.1 | 10 |
| lineage3 | 3 |
| lineage4.2.2.2 | 5 |
| lineage2.1 | 1 |
| lineage4 | 3 |
| lineage4.3.4.2 | 1 |
| lineage3.1;lineage4.2.2 | 1 |
| lineage4.1.2.1;lineage4.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 169 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR6358926 | MDR-TB | lineage4.6.1.2 | None | SRR6807742 | MDR-TB | lineage4.2.1 | None | SRR10379879 | HR-TB | lineage2.2.1;lineage4.2.1 | None | SRR22251315 | Pre-XDR-TB | lineage4.8 | None | ERR3078016 | MDR-TB | lineage3.1.1 | None | SRR7755658 | Pre-XDR-TB | lineage4.2.1 | None | SRR14802135 | MDR-TB | lineage4.2.1 | None | SRR23311040 | MDR-TB | lineage4.2.1 | None | SRR5153915 | MDR-TB | lineage4.2.1 | None | SRR23340103 | MDR-TB | lineage4.2.1 | None | SRR29385410 | Pre-XDR-TB | lineage2.2.2 | None | ERR13285770 | Pre-XDR-TB | lineage4.2.1 | None | ERR5865655 | MDR-TB | lineage4.3.3 | None | SRR9588008 | MDR-TB | lineage4.4.1.1 | None | ERR4813632 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4797953 | Pre-XDR-TB | lineage2.2.1.1 | in | SRR13870421 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR7910851 | MDR-TB | lineage4.1.2.1 | None | SRR10379931 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR21700920 | Other | lineage4.9 | None | SRR21700817 | Other | lineage4.9 | None | ERR13285715 | MDR-TB | lineage4.2.1 | None | SRR28394111 | MDR-TB | lineage4.1.2.1 | None | SRR28498643 | Pre-XDR-TB | lineage4.2.1 | None | ERR3287777 | MDR-TB | lineage4.3.4.1;lineage4.9 | None | SRR21700934 | Other | lineage4.9 | None | SRR21700933 | Other | lineage4.9 | None | SRR14801366 | MDR-TB | lineage4.2.1 | None | SRR28498709 | MDR-TB | lineage4.2.1 | None | SRR14801474 | MDR-TB | lineage4.2.1 | None | ERR12117978 | MDR-TB | lineage4.1.1.3 | None | ERR3287515 | MDR-TB | lineage4.1.2.1 | pe | ERR7911264 | MDR-TB | lineage4.2.1 | md | ERR7910853 | MDR-TB | lineage4.3.4.1 | pe | SRR28498387 | MDR-TB | lineage4.2.1 | None | ERR7910957 | MDR-TB | lineage4.2.1 | md | ERR7910965 | MDR-TB | lineage4.2.1 | md | ERR7910918 | MDR-TB | lineage4.2.1 | md | ERR7911086 | MDR-TB | lineage4.2.1 | md | ERR8975724 | XDR-TB | lineage4.4.1.1.1 | None | ERR9992838 | XDR-TB | lineage4.4.1.1.1 | None | SRR14801491 | MDR-TB | lineage4.2.1 | None | ERR13285844 | MDR-TB | lineage4.2.1 | None | SRR28393257 | MDR-TB | lineage4.3.4.1 | None | SRR28393336 | MDR-TB | lineage4.6.1.2 | None | SRR14782478 | MDR-TB | lineage4.2.1 | None | ERR11798767 | MDR-TB | lineage4.2.1 | None | ERR11798766 | MDR-TB | lineage4.2.1 | None | ERR7910852 | MDR-TB | lineage4.1.2.1 | None | ERR8975732 | MDR-TB | lineage4.4.1.1.1 | None | SRR22424879 | Pre-XDR-TB | lineage3.1.2.1 | None | SRR21700814 | Other | lineage4.9 | None | SRR5153824 | MDR-TB | lineage4.2.1 | None | ERR3132133 | MDR-TB | lineage4.5 | None | SRR18912556 | Sensitive | lineage4.3 | None | SRR29772420 | MDR-TB | lineage1.2.2.2 | None | SRR7755704 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | ERR4813171 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR19276641 | HR-TB | lineage4.1.2.1 | None | SRR13232689 | Pre-XDR-TB | lineage2.2.1 | None | SRR28393439 | MDR-TB | lineage4.1.2.1 | None | ERR5865656 | MDR-TB | lineage4.3.3 | None | SRR10380077 | MDR-TB | lineage4.2.1 | None | SRR29231845 | MDR-TB | lineage4.3.4.1 | None | SRR1166331 | MDR-TB | lineage4.2.1 | None | ERR4796868 | MDR-TB | lineage3 | in | ERR10762459 | MDR-TB | lineage4.2.1 | None | SAMEA5569971 | MDR-TB | lineage4.3.4.1 | None | ERR4797715 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4798327 | Pre-XDR-TB | lineage3.1.2.1 | in | ERR4798411 | MDR-TB | lineage4.2.2.2 | in | SRR11662528 | MDR-TB | lineage2.1 | None | SRR21700926 | Other | lineage4.9 | None | SRR5153827 | MDR-TB | lineage4.2.1 | None | SRR21700929 | Other | lineage4.9 | None | SRR21700923 | Other | lineage4.9 | None | SRR21700813 | Other | lineage4.9 | None | SRR21700919 | Other | lineage4.9 | None | SRR21700931 | Other | lineage4.9 | None | SRR21700924 | Other | lineage4.9 | None | SRR21700922 | Other | lineage4.9 | None | SRR21700921 | Other | lineage4.9 | None | SRR21700927 | Other | lineage4.9 | None | SAMN02584604 | MDR-TB | lineage4.2.1 | md | SRR21700815 | Other | lineage4.9 | None | ERR7737896 | MDR-TB | lineage4.2.2.2 | None | SRR069945 | MDR-TB | lineage2.2.1 | None | SRR28393275 | MDR-TB | lineage4.3.4.1 | None | SRR28045449 | Pre-XDR-TB | lineage3 | None | ERR3287870 | MDR-TB | lineage4.1.2.1 | pe | SRR28498571 | HR-TB | lineage2.2.1;lineage4.2.1 | None | ERR4808976 | MDR-TB | lineage4.4.1.1.1 | None | SRR28393307 | MDR-TB | lineage4.1.2.1 | None | ERR2706922 | MDR-TB | lineage4.3.4.1 | cd | ERR2706965 | MDR-TB | lineage4.3.4.1 | cd | ERR4812567 | MDR-TB | lineage4 | pe | ERR775298 | MDR-TB | lineage4.1.2.1 | pe | ERR8975498 | MDR-TB | lineage4.4.1.1.1 | None | ERR2510219 | MDR-TB | lineage4.1.2.1 | pe | SRR14782363 | MDR-TB | lineage4.2.1 | None | SRR18913782 | Sensitive | lineage4.3 | None | SRR10380241 | Pre-XDR-TB | lineage4.2.1 | None | ERR1034733 | MDR-TB | lineage4.1.2.1 | pe | SRR11662265 | MDR-TB | lineage2.2.1 | None | SRR28394028 | MDR-TB | lineage4 | None | SRR28351415 | MDR-TB | lineage4.2.1 | None | SRR6807729 | MDR-TB | lineage4.2.1 | None | ERR10762398 | MDR-TB | lineage4.2.1 | None | ERR6879028 | MDR-TB | lineage4.1.2.1 | None | ERR5917697 | MDR-TB | lineage2.2.1 | by | ERR3287322 | MDR-TB | lineage4.1.2.1 | pe | ERR9029846 | MDR-TB | lineage4.3.4.1 | None | SRR10380245 | Pre-XDR-TB | lineage4.2.1 | None | SRR29231851 | MDR-TB | lineage4.3.4.1 | None | ERR4011954 | MDR-TB | lineage4.2.2.2 | None | SRR28498585 | MDR-TB | lineage4.2.1 | None | SRR14782345 | MDR-TB | lineage4.2.1 | None | ERR11798769 | Pre-XDR-TB | lineage4.2.1 | None | SRR067482 | MDR-TB | lineage2.2.1 | None | SRR069949 | MDR-TB | lineage2.2.1 | None | SRR23311010 | HR-TB | lineage4.2.1 | None | ERR13292411 | Sensitive | lineage4.3 | None | ERR13285713 | MDR-TB | lineage4.2.1 | None | SRR13232673 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762305 | MDR-TB | lineage4.2.1 | None | SRR16370507 | MDR-TB | lineage4.3.4.1 | None | ERR6866050 | MDR-TB | lineage4.1.2.1 | None | SRR28393937 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR29094093 | MDR-TB | lineage4.2.2.2 | None | ERR1034814 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR4797557 | MDR-TB | lineage3 | in | ERR4799919 | Pre-XDR-TB | lineage3.1;lineage4.2.2 | in | ERR4799716 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4798441 | Pre-XDR-TB | lineage2.2.1.1 | in | SRR21700932 | Other | lineage4.9 | None | SRR21700925 | Other | lineage4.9 | None | SRR28339292 | Pre-XDR-TB | lineage4.9 | None | SRR21700930 | Other | lineage4.9 | None | ERR13292442 | Sensitive | lineage4.3 | None | SRR28339291 | Pre-XDR-TB | lineage4.9 | None | SRR21690032 | HR-TB | lineage4.3.3 | None | ERR2184224 | MDR-TB | lineage4.1.2.1 | pe | ERR3287850 | Pre-XDR-TB | lineage4.1.2.1 | pe | SRR28498467 | MDR-TB | lineage4.1.2.1;lineage4.2.1 | None | ERR3287737 | MDR-TB | lineage4.1.2.1 | pe | ERR7737765 | MDR-TB | lineage3.1.1 | None | ERR4813977 | MDR-TB | lineage4.8 | br | ERR7911057 | MDR-TB | lineage4.2.1 | md | SRR7646012 | MDR-TB | lineage4.2.1 | None | SRR7755738 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR28393692 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR228028 | MDR-TB | lineage2.2.1 | ru | ERR2516618 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR2516673 | Pre-XDR-TB | lineage4.1.2.1 | pe | SRR14781855 | MDR-TB | lineage4.2.1 | None | ERR9992634 | XDR-TB | lineage4.4.1.1.1 | None | SRR28351495 | MDR-TB | lineage4.2.1 | None | ERR13285809 | MDR-TB | lineage4.2.1 | None | SRR28393618 | MDR-TB | lineage4 | None | ERR4827763 | MDR-TB | lineage2.2.1 | None | SRR1169173 | MDR-TB | lineage4.2.1 | None | ERR11798768 | MDR-TB | lineage4.2.1 | None | ERR2515997 | MDR-TB | lineage4.4.1.1.1 | za | ERR3287875 | Pre-XDR-TB | lineage4.1.2.1 | pe | SRR16115864 | Sensitive | lineage4.3 | None | SRR10808423 | MDR-TB | lineage4.1.2.1 | None | ERR10762234 | MDR-TB | lineage4.2.1 | None | ERR4025001 | MDR-TB | lineage4.1.2.1 | None | SRR13232694 | Pre-XDR-TB | lineage2.2.1 | None |
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