Run ID: ERR4799716
Sample name:
Date: 01-04-2023 09:19:01
Number of reads: 4089915
Percentage reads mapped: 99.47
Strain: lineage4.2.2.2
Drug-resistance: Pre-XDR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.2 | Euro-American | H;T;LAM | None | 0.99 |
lineage4.2.2 | Euro-American (Ural) | T;LAM7-TUR | None | 0.98 |
lineage4.2.2.2 | Euro-American (Ural) | T;LAM7-TUR | None | 0.97 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gyrA | 7572 | p.Ser91Pro | missense_variant | 1.0 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
rpoB | 761155 | p.Ser450Leu | missense_variant | 1.0 | rifampicin |
rrs | 1472362 | n.517C>T | non_coding_transcript_exon_variant | 1.0 | streptomycin |
katG | 2155168 | p.Ser315Thr | missense_variant | 0.98 | isoniazid |
pncA | 2288790 | p.Leu151Ser | missense_variant | 0.98 | pyrazinamide |
eis | 2715347 | c.-15C>G | upstream_gene_variant | 0.99 | kanamycin |
folC | 2747480 | p.Glu40Gly | missense_variant | 0.98 | para-aminosalicylic_acid |
embB | 4247730 | p.Gly406Ala | missense_variant | 0.98 | ethambutol |
ethA | 4327480 | c.-7T>C | upstream_gene_variant | 0.97 | ethionamide |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8688 | p.Ala463Ser | missense_variant | 0.97 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576077 | c.730C>T | synonymous_variant | 0.97 |
rpoB | 761489 | c.1683G>A | synonymous_variant | 0.99 |
rpoC | 767123 | p.Val1252Met | missense_variant | 0.98 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
Rv2752c | 3066280 | c.-89C>T | upstream_gene_variant | 0.98 |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 0.95 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3449765 | c.1264delA | frameshift_variant | 0.98 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embC | 4240327 | c.465G>A | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
ubiA | 4269721 | p.Ala38Val | missense_variant | 0.99 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |