Rv2416c - c.-15C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
3 HR-TB
65 MDR-TB
44 Pre-XDR-TB
1 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.2.1 | 13 |
| lineage4.7 | 11 |
| lineage2.2.1 | 57 |
| lineage4.1.2.1 | 6 |
| lineage4.3.3 | 5 |
| lineage2.2.1;lineage4.2.1 | 2 |
| lineage4 | 7 |
| lineage4.3.4.2 | 6 |
| lineage4.1.2.1;lineage4.4.1.1 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.5 | 1 |
| lineage4.2.2.2 | 1 |
| lineage2.2.1;lineage4.8 | 1 |
| lineage4.8 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 113 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR551948_ERR551949 | MDR-TB | lineage4.2.1 | None | SRR7592356 | Pre-XDR-TB | lineage4.7 | None | ERR13284659 | MDR-TB | lineage2.2.1 | None | ERR5864836 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865855 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261323 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043416 | MDR-TB | lineage2.2.1 | None | SRR28240198 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865856 | Pre-XDR-TB | lineage2.2.1 | None | SRR7646028 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093865 | MDR-TB | lineage2.2.1 | None | ERR13284057 | MDR-TB | lineage4.1.2.1 | None | ERR1035023 | MDR-TB | lineage2.2.1 | za | ERR11081610 | MDR-TB | lineage2.2.1 | None | ERR13260663 | Pre-XDR-TB | lineage4.3.3 | None | ERR13281467 | Pre-XDR-TB | lineage2.2.1 | None | SRR3085247 | MDR-TB | lineage2.2.1 | None | ERR9806986 | MDR-TB | lineage2.2.1 | None | ERR4822283 | Pre-XDR-TB | lineage2.2.1 | None | SRR22048295 | MDR-TB | lineage4.7 | None | ERR551949 | MDR-TB | lineage4.2.1 | None | ERR227986 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR10808688 | Pre-XDR-TB | lineage4 | None | ERR2510182 | MDR-TB | lineage4 | pe | ERR234651 | MDR-TB | lineage2.2.1 | ru | SRR7646001 | Pre-XDR-TB | lineage2.2.1 | None | ERR2600489 | MDR-TB | lineage4.3.4.2 | None | ERR4827974 | Pre-XDR-TB | lineage2.2.1 | None | SRR7516292 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830570 | MDR-TB | lineage2.2.1 | None | SRR10147711 | MDR-TB | lineage2.2.1 | None | ERR2184337 | Pre-XDR-TB | lineage4 | None | SRR16088127 | HR-TB | lineage4.2.1 | None | ERR5864838 | Pre-XDR-TB | lineage2.2.1 | None | ERR551343_ERR551342 | MDR-TB | lineage4.1.2.1 | None | SRR29273724 | MDR-TB | lineage4.7 | None | ERR5864837 | Pre-XDR-TB | lineage2.2.1 | None | ERR13273246 | Pre-XDR-TB | lineage2.2.1 | None | SRR29274089 | MDR-TB | lineage4.7 | None | ERR4011078 | MDR-TB | lineage2.2.1 | None | ERR227993 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | ERR2307489 | HR-TB | lineage2.2.1 | None | ERR8774377 | HR-TB | lineage4.2.1 | None | SRR7592366 | MDR-TB | lineage4.7 | None | SRR29539404 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256236 | Pre-XDR-TB | lineage2.2.1 | None | ERR15758287 | MDR-TB | lineage2.2.1 | None | ERR550685 | MDR-TB | lineage4.2.1 | None | ERR11043984 | MDR-TB | lineage2.2.1 | None | SRR28393820 | MDR-TB | lineage4.1.2.1;lineage4.4.1.1 | None | ERR4828899 | MDR-TB | lineage4.7 | None | ERR4830746 | MDR-TB | lineage2.2.1 | ir | ERR4829752 | Pre-XDR-TB | lineage4.4.1.1 | it | ERR751548 | Pre-XDR-TB | lineage4.3.3 | pe | ERR4831993 | MDR-TB | lineage2.2.1 | vn | SAMEA2533390 | MDR-TB | lineage4.2.1 | uz | SAMEA2534308 | MDR-TB | lineage4.2.1 | uz | ERR551342 | MDR-TB | lineage4.1.2.1 | None | ERR5864839 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866558 | Pre-XDR-TB | lineage2.2.1 | None | SRR13870374 | Pre-XDR-TB | lineage4 | None | SRR6257027 | MDR-TB | lineage2.2.1 | ru | SRR28706507 | MDR-TB | lineage2.2.1 | None | ERR5866559 | Pre-XDR-TB | lineage2.2.1 | None | ERR228001 | MDR-TB | lineage4.2.1 | ru | ERR2677463 | MDR-TB | lineage2.2.1 | de | SRR28434995 | XDR-TB | lineage2.2.1 | None | SRR7592357 | MDR-TB | lineage4.7 | None | ERR551948 | MDR-TB | lineage4.2.1 | None | ERR11069100 | MDR-TB | lineage2.2.1 | None | SRR7592350 | Pre-XDR-TB | lineage4.7 | None | SRR24256184 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284698 | MDR-TB | lineage2.2.1 | None | ERR13267077 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276274 | MDR-TB | lineage2.2.1 | None | ERR13261386 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273679 | MDR-TB | lineage4.7 | None | ERR4813604 | Pre-XDR-TB | lineage4.3.3 | None | ERR13290730 | MDR-TB | lineage4.5 | None | ERR13276176 | MDR-TB | lineage2.2.1 | None | SRR29539363 | Pre-XDR-TB | lineage2.2.1 | None | ERR550685_ERR550684 | MDR-TB | lineage4.2.1 | None | SRR7781498 | MDR-TB | lineage4.7 | None | ERR4799716 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4800461 | Pre-XDR-TB | lineage2.2.1 | in | ERR5864840 | Pre-XDR-TB | lineage2.2.1 | None | SRR25395643 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR13273345 | Pre-XDR-TB | lineage2.2.1 | None | ERR3287672 | MDR-TB | lineage4 | pe | ERR751408 | MDR-TB | lineage4 | pe | SRR28393661 | MDR-TB | lineage4.3.4.2 | None | ERR227974 | MDR-TB | lineage2.2.1;lineage4.8 | None | ERR11773830 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813385 | MDR-TB | lineage4 | pe | SRR5486901 | MDR-TB | lineage4.1.2.1 | None | SAMEA2533870 | MDR-TB | lineage4.1.2.1 | uz | ERR144579 | MDR-TB | lineage2.2.1 | ru | ERR234692 | MDR-TB | lineage2.2.1 | ru | ERR137255 | MDR-TB | lineage2.2.1 | ru | ERR137209 | MDR-TB | lineage4.3.3 | ru | ERR234669 | Pre-XDR-TB | lineage4.2.1 | ru | ERR12118056 | Pre-XDR-TB | lineage4.3.3 | None | ERR067752 | Pre-XDR-TB | lineage4.2.1 | ru | SRR29539447 | MDR-TB | lineage2.2.1 | None | SRR29772486 | Pre-XDR-TB | lineage4.8 | None | SRR10380218 | MDR-TB | lineage4.3.4.2 | None | ERR4276855 | Pre-XDR-TB | lineage2.2.1 | None | ERR4896324 | MDR-TB | lineage2.2.1 | None | ERR550684 | MDR-TB | lineage4.2.1 | None | ERR11798636 | MDR-TB | lineage4.3.4.2 | None | SRR10380217 | MDR-TB | lineage4.3.4.2 | None | ERR4828987 | MDR-TB | lineage4.7 | it | ERR11043544 | MDR-TB | lineage4.1.2.1 | None |
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