ERR5864425
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832244
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550848
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4407496
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16088168
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552302
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11828973
|
Pre-XDR-TB
|
lineage2.1
|
th
|
ERR551844_ERR551845
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11828990
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR11082755
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4828123
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827768
|
HR-TB
|
lineage2.2.1
|
None
|
SRR10828184
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR3470691
|
MDR-TB
|
lineage3
|
None
|
ERR4828452
|
HR-TB
|
lineage2.2.1.1
|
vn
|
SRR6257029
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR5709869
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
ERR3273092
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232555
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865691
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2513013
|
Other
|
lineage4.4.1.1
|
gb
|
ERR551845
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534220
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR5709932
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
SRR12072598
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR4830155
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR133908
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR552433
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2307525
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28888067
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR11828976
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR29051100
|
HR-TB
|
lineage2.2.1.1
|
None
|
ERR5865994
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715033
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6831746
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284457
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534496
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR551295_ERR551296
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6458425
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12142388
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163172
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR20969996
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551295
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533465
|
HR-TB
|
lineage2.2.1
|
tm
|
ERR4828032
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2199795
|
HR-TB
|
lineage3
|
de
|
ERR553064
|
HR-TB
|
lineage2.2.1
|
None
|
ERR3794428
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827475
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10341356
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551827_ERR551826
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830627
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550985
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040376
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8327263
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28467051
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2307441
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11715725
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR551554
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4195431
|
Other
|
lineage4.1.2.1
|
None
|
ERR4828103
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7975644
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR551844
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552113
|
HR-TB
|
lineage2.2.1
|
uz
|
SRR18714963
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550658
|
HR-TB
|
lineage2.2.1
|
None
|
SRR6257043
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169046
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR11715724
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR4827721
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11043036
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4827673
|
HR-TB
|
lineage2.2.1
|
None
|
SRR12420465
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762415
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4828053
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28389841
|
Other
|
lineage4.3.4.1
|
None
|
SRR5114018
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR552500
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865995
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866496
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5709899
|
Pre-XDR-TB
|
lineage2.1
|
th
|
ERR11081229
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28044429
|
HR-TB
|
lineage1.1.2
|
None
|
ERR552951_ERR552950
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11773788
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02419670
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
by
|
SRR28239436
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5065515
|
HR-TB
|
lineage2.2.1.1
|
vn
|
SRR28706398
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5306022
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28434979
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11773820
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11773817
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8379902
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29385490
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539640
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539828
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539509
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29681257
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21732165
|
HR-TB
|
lineage2.2.1
|
None
|
ERR551826
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551827
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552645
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864433
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10341351
|
MDR-TB
|
lineage2.1;lineage2.2.1
|
None
|
SRR10341352
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR21576670
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13291212
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827696
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4830056
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12072599
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR4827739
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828022
|
HR-TB
|
lineage2.2.1
|
None
|
SRR11828987
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR11068679
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082648
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864434
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5114021
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR27757527
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR10828203
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR29539155
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550783
|
HR-TB
|
lineage2.2.1
|
None
|
ERR552951
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534236
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR2843518
|
HR-TB
|
lineage2.2.1.1
|
None
|
ERR4827968
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093373
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552950
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16089534
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18714969
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7070595
|
Other
|
lineage4.4.1.1
|
None
|
SRR5114017
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR6824615
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR9124921
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28888085
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28888051
|
XDR-TB
|
lineage4.3.3
|
None
|
ERR5864471
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864468
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865692
|
MDR-TB
|
lineage2.2.1
|
None
|
DRR473889
|
HR-TB
|
lineage2.2.1.1
|
None
|
ERR11043753
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10394882
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR24828609
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827822
|
HR-TB
|
lineage2.2.1
|
None
|
ERR5864424
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799716
|
Pre-XDR-TB
|
lineage4.2.2.2
|
in
|
SRR5114022
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR551237
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866034
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29053578
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864428
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866581
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10828180
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6832536
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10828181
|
MDR-TB
|
lineage2.1;lineage2.2.1
|
None
|
ERR4828455
|
HR-TB
|
lineage2.2.1.1
|
None
|
SAMEA2533843
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR10828183
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SAMEA2534371
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR25206923
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23938640
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864473
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9121700
|
Other
|
lineage4.1.2.1
|
None
|
ERR4830170
|
HR-TB
|
lineage2.2.1
|
None
|
ERR776664
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR25515371
|
HR-TB
|
lineage2.2.1
|
None
|
ERR552045
|
RR-TB
|
lineage2.2.1
|
None
|
ERR3794405
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15316399
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864472
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR2100283
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4828101
|
HR-TB
|
lineage2.2.1
|
None
|
DRR188650
|
HR-TB
|
lineage2.2.1
|
None
|
ERR114434
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5864430
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827723
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534644
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR4828136
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552225
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2600591
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2653092
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
SRR10040295
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR8364677
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8433192
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832837
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866508
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7069335
|
Other
|
lineage3
|
None
|
ERR4810476
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR5865514
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533519
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR14801736
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5710027
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR14801730
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8368702
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20969656
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551249_ERR551247_ERR551248
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2307540
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153242
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24709892
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830647
|
MDR-TB
|
lineage2.2.1
|
tm
|
SRR25827801
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5709762
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR16089544
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1035089
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR8352463
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMEA2535024
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR28498376
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2307606
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13291214
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827785
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1213858
|
MDR-TB
|
lineage2.2.1
|
kr
|
ERR4811346
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR552044_ERR552045_ERR552046
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2307435
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762332
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR3273177
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16089532
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10828195
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088069
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR553251
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28888064
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR552819_ERR552818
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551249
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284395
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8360458
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827918
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551168
|
HR-TB
|
lineage2.2.1
|
None
|
ERR5864432
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864427
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13232483
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256255
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR133916
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR4827735
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1172073
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR11828983
|
Pre-XDR-TB
|
lineage2.1
|
th
|
ERR2307571
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5709801
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
ERR550849
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26399267
|
HR-TB
|
lineage2.2.1.1
|
None
|
SRR18500592
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498481
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552226
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11775772
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552147
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715197
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11715722
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR12420479
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3205958
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR5865515
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285881
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR1723838
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR28240098
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28044341
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR28888078
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13298158
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498392
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539274
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539539
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29538915
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29914419
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827691
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3639698
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828037
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12072597
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR11798529
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28888075
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR552044
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864420
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10394883
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR12420388
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539316
|
Other
|
lineage2.2.1
|
None
|
ERR552711
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865152
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMEA2533805
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2533459
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR12420341
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11828988
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR5709887
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR6832143
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8429777
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13273192
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13291232
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13276414
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088470
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29052957
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8335314
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10341353
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR550659
|
HR-TB
|
lineage2.2.1
|
None
|
SRR8847016
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28239847
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6831814
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8380043
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18715337
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539842
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864421
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6257088
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830160
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550772
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552818
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040429
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2535248
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR8366173
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11043752
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828055
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256102
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539369
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828464
|
Other
|
lineage2.2.1.1
|
None
|
ERR4276871
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799633
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28888070
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR8346382
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550782
|
HR-TB
|
lineage2.2.1
|
None
|
ERR553389
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865150
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR11828989
|
Pre-XDR-TB
|
lineage2.1
|
th
|
ERR553251_ERR553252
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8348431
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8369839
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832452
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16370391
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5864469
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552147_ERR552148
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2653135
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4828115
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082735
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2307484
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29385250
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29356736
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10828191
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR11773828
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830103
|
HR-TB
|
lineage2.2.1
|
None
|
SRR12072600
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR551035
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3085269
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864435
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827425
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828976
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715340
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866509
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864422
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8426987
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827937
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1002689
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830888
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16089912
|
HR-TB
|
lineage4.8
|
None
|
ERR4798865
|
Other
|
lineage1.2.2.2
|
in
|
ERR9993163
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR552434
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550773
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552842
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864429
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5114020
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR2653117
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
SRR11972428
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534793
|
MDR-TB
|
lineage2.2.1
|
uz
|
SAMEA2534925
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR4827964
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827797
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865151
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR552841_ERR552842
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552434_ERR552433
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26112131
|
HR-TB
|
lineage2.2.1
|
None
|
ERR2677387
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
DRR130175
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8351971
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4819920
|
MDR-TB
|
lineage3
|
None
|
ERR4827828
|
HR-TB
|
lineage2.2.1
|
None
|
SRR29356683
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813152
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25207345
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16057914
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4812843
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR13232544
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866065
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911151
|
Pre-XDR-TB
|
lineage2.2.2
|
vn
|
ERR108450
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR552501_ERR552500
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8369849
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR229951
|
MDR-TB
|
lineage2.2.1;lineage4.1.2.1
|
None
|
SRR25207091
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552302_ERR552301
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551167
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4827887
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539855
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550773_ERR550772
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3132088
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8357446
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25515019
|
HR-TB
|
lineage2.2.1
|
None
|
ERR5866064
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552646
|
MDR-TB
|
lineage2.2.1
|
None
|
DRR130183
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR9907695
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR552501
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10828193
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR8442761
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798655
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SAMEA2534444
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR10341347
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR25207341
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27757528
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR2935859
|
HR-TB
|
lineage4.3.4.1
|
None
|
SRR28888065
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR3086357
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28888084
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR11828982
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR7516392
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28467044
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR12916925
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351404
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5709798
|
Pre-XDR-TB
|
lineage2.1
|
th
|
ERR13289437
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11773819
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29538875
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29681372
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29681398
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13291472
|
HR-TB
|
lineage4.8
|
None
|
ERR11043974
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1163374
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR11662417
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR10380204
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR17856656
|
HR-TB
|
lineage2.2.1.1
|
None
|
SRR23938690
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534554
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR671781
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR13284281
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR553063
|
HR-TB
|
lineage2.2.1
|
None
|
ERR9907733
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR29772759
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR4822550
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827435
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827990
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28888063
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11773826
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284499
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351250
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4828979
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13289500
|
HR-TB
|
lineage2.2.1
|
None
|
ERR7975631
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2533372
|
HR-TB
|
lineage2.2.1
|
uz
|
ERR551963
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3794525
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8354585
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28435001
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR552712_ERR552711
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552712
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7737903
|
MDR-TB
|
lineage3
|
None
|
SRR16088469
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284707
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284767
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24710032
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5709764
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SRR29093948
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827644
|
HR-TB
|
lineage2.2.1
|
None
|
SRR23252659
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
SRR3085257
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864436
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6257096
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665886
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2307404
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552169
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMEA2534842
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR4831247
|
MDR-TB
|
lineage2.2.1
|
de
|
ERR5917704
|
MDR-TB
|
lineage2.2.1
|
by
|
SRR10828200
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR24256042
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5837708
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SAMEA2534945
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR10341349
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR6785479
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256161
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18500603
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8380010
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827861
|
Other
|
lineage1.2.2.2;lineage3.1.2.1
|
None
|
ERR4827886
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830592
|
MDR-TB
|
lineage2.2.1
|
tm
|
SRR29681461
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR28858373
|
Other
|
lineage1.2.1.2.1
|
None
|
ERR4830632
|
MDR-TB
|
lineage2.2.1
|
tm
|
SRR5709872
|
Pre-XDR-TB
|
lineage2.1
|
th
|
ERR7975642
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552645_ERR552646
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13273358
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715339
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11715720
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR4827566
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13180388
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7516322
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3205959
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR550848_ERR550849
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866033
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799919
|
Pre-XDR-TB
|
lineage3.1.2;lineage4.2.2.2
|
in
|
ERR552819
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4195733
|
Other
|
lineage4.1.2.1
|
None
|
SRR5114019
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR3639803
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551296
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827480
|
HR-TB
|
lineage2.2.1
|
None
|
SRR25515669
|
HR-TB
|
lineage2.2.1
|
None
|
SAMEA2533751
|
HR-TB
|
lineage2.2.1
|
tm
|
ERR4830136
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864423
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9907747
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR11662498
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR5709891
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
SRR18714845
|
HR-TB
|
lineage2.2.1
|
None
|
SRR8427096
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8354716
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828113
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552841
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552148
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5709934
|
Pre-XDR-TB
|
lineage2.1
|
th
|
SAMEA2534691
|
MDR-TB
|
lineage2.2.1
|
uz
|
ERR13291230
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552226_ERR552225
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799210
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR228059
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SRR7657749
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798411
|
MDR-TB
|
lineage4.2.2.2
|
in
|
SRR5153269
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27069405
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552301
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802189
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11828975
|
Pre-XDR-TB
|
lineage2.1
|
th
|
ERR553252
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864419
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864431
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864470
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR20969451
|
MDR-TB
|
lineage2.2.1
|
None
|