SRR15316342
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR8975718
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR21700927
|
Other
|
lineage4.9
|
None
|
SRR29016858
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR29055681
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR28646090
|
XDR-TB
|
lineage4.2.1
|
None
|
ERR11774908
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25207218
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1174323
|
MDR-TB
|
lineage4.4
|
None
|
SRR28394207
|
MDR-TB
|
lineage4
|
None
|
SRR28646054
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR13286141
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13288789
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13288957
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13289027
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13290971
|
MDR-TB
|
lineage4.5
|
None
|
ERR13291137
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13286144
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13288845
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR9971213
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13291058
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR13291231
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR29385399
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29385412
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR28498392
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772488
|
MDR-TB
|
lineage3
|
None
|
ERR4829096
|
MDR-TB
|
lineage4.2.2.2
|
dj
|
SRR30180260
|
MDR-TB
|
lineage4.5
|
None
|
ERR4828973
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR6052059
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR7737875
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR7910913
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR6824389
|
Pre-XDR-TB
|
lineage2.2.1.1
|
cn
|
SRR21700929
|
Other
|
lineage4.9
|
None
|
SRR29017379
|
MDR-TB
|
lineage1.1.3.1
|
None
|
SRR29093851
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR3078007
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR3335748
|
Pre-XDR-TB
|
lineage3.1.3
|
pk
|
ERR13288720
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR3287820
|
XDR-TB
|
lineage4.1.2.1
|
pe
|
ERR3335794
|
MDR-TB
|
lineage3
|
pk
|
ERR9907674
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR11082820
|
MDR-TB
|
lineage4.7
|
None
|
SRR14782483
|
HR-TB
|
lineage2.2.1
|
None
|
ERR11082648
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813124
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR29017222
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865206
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1724009
|
MDR-TB
|
lineage4.2.2
|
cn
|
ERR10680017
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR10748241
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR137240
|
HR-TB
|
lineage2.2.1
|
ru
|
SRR29289260
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR6480519
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13266461
|
XDR-TB
|
lineage4.1.2.1
|
None
|
SRR7592372
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR4822550
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4829097
|
MDR-TB
|
lineage4.2.2.1
|
dj
|
ERR4830510
|
MDR-TB
|
lineage2.2.2
|
za
|
ERR11774913
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29289423
|
XDR-TB
|
lineage3
|
None
|
ERR13276438
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5987315
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR26399515
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR9119921
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR2024982
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR4831560
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR13284919
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
DRR130062
|
RR-TB
|
lineage2.2.1
|
None
|
ERR9119734
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR7069122
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4553486
|
MDR-TB
|
lineage4.8
|
None
|
SRR27107260
|
MDR-TB
|
lineage4.8
|
None
|
SRR11972328
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR10525342
|
Pre-XDR-TB
|
lineage4.1.2.1;lineage4.2.1
|
None
|
SRR6831814
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284987
|
MDR-TB
|
lineage4.8
|
None
|
ERR8976001
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29385273
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR25827550
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage3.1
|
None
|
SRR6257010
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4819868
|
MDR-TB
|
lineage4.2.2.1
|
gb
|
ERR7911204
|
MDR-TB
|
lineage2.2.2
|
za
|
SRR29016969
|
MDR-TB
|
lineage4.1.2.1;lineage4.3.4.1
|
None
|
ERR5864471
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864468
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992726
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR13290848
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.5
|
None
|
ERR13284600
|
MDR-TB
|
lineage4.7
|
None
|
SRR23862191
|
Other
|
lineage4.3.3
|
None
|
SRR29539548
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR29017243
|
MDR-TB
|
lineage3
|
None
|
ERR4553494
|
Pre-XDR-TB
|
|
None
|
SRR26159056
|
MDR-TB
|
lineage4.9
|
None
|
SRR10808353
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4822270
|
MDR-TB
|
lineage4.2.2.1
|
None
|
SRR5341405
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR552707
|
HR-TB
|
lineage4.1.2.1
|
None
|
ERR4799263
|
Pre-XDR-TB
|
lineage4.1.2.1
|
in
|
ERR10680175
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR13870413
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR553166_ERR553165_ERR553164
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR6832452
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8025630
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9992835
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR9993027
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR16089533
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR5486876
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR5987299
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR20969664
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5864469
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2516940
|
MDR-TB
|
lineage3
|
gb
|
ERR4808899
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR4809327
|
MDR-TB
|
lineage4.3.3
|
za
|
ERR4813176
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR21031713
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15723202
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR067598
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR10225529
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR21700924
|
Other
|
lineage4.9
|
None
|
ERR5865621
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1165686
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR11488511
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28045048
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
ERR9992956
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR3082077
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR4553466
|
MDR-TB
|
|
None
|
SRR28044541
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
SRR28394228
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4553795
|
MDR-TB
|
|
None
|
SRR1169170
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR20969716
|
HR-TB
|
lineage2.2.1
|
None
|
ERR108428
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR28393433
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28351345
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR11774959
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11773719
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29273667
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR9993053
|
XDR-TB
|
lineage4.4.1.1
|
None
|
SRR29017432
|
HR-TB
|
lineage1.1.3.1
|
None
|
SRR27107291
|
MDR-TB
|
lineage4.8
|
None
|
ERR10680104
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4813126
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4813200
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR1165693
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR11043505
|
MDR-TB
|
lineage4.2.2.1;lineage5
|
None
|
ERR2184393
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
ERR4828853
|
MDR-TB
|
lineage3
|
None
|
ERR5758461
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1172081
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR6511612
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR7653083
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7795460
|
HR-TB
|
lineage4.1.2.1
|
None
|
SRR833216
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR8434867
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11033717
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8975642
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR21277283
|
XDR-TB
|
lineage4.4.2
|
None
|
SRR1173793
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11044928
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510377
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR2653060
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR26399327
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9992631
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR9992970
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR9993183
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR9993188
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR11774911
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR1165712
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1169123
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR24827269
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR4553943
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR4553954
|
HR-TB
|
lineage1.1.3.1
|
None
|
SRR4423178
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR27107297
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13261254
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR11488526
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR8434639
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801641
|
HR-TB
|
lineage2.2.1
|
None
|
ERR10748100
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR21700921
|
Other
|
lineage4.9
|
None
|
ERR4813202
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR10748258
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5987225
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4796732
|
Pre-XDR-TB
|
lineage4.9
|
in
|
ERR2653048
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR14782340
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6362557
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29539842
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29096313
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR28435001
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7592385
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR671757
|
RR-TB
|
lineage4.5
|
cn
|
SRR29273625
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR11082922
|
MDR-TB
|
lineage4.8
|
None
|
ERR4810851
|
Pre-XDR-TB
|
lineage2.2.2
|
cn
|
ERR2307374
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7517815
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR2653141
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR3055720
|
MDR-TB
|
lineage2.2.2;lineage4.4.1.1
|
None
|
SRR21700813
|
Other
|
lineage4.9
|
None
|
SRR10726053
|
HR-TB
|
lineage1.1.2
|
None
|
SRR10315591
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9993126
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR024053
|
MDR-TB
|
lineage4.8
|
None
|
SRR12062483
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4813133
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR21700923
|
Other
|
lineage4.9
|
None
|
SRR1167128
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR27107240
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR25827607
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
SRR11349168
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR28393441
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR1162893
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR10748233
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4798828
|
Pre-XDR-TB
|
lineage4.8
|
in
|
SRR25207229
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911331
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR4553590
|
Pre-XDR-TB
|
|
None
|
ERR13284855
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290946
|
MDR-TB
|
lineage4.5
|
None
|
ERR13258443
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4798091
|
MDR-TB
|
lineage4.8
|
in
|
ERR9993130
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR7795465
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SAMN02360557
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR1011521
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SAMN02403615
|
MDR-TB
|
lineage2.2.2
|
za
|
SRR15014763
|
HR-TB
|
lineage1.1.2
|
None
|
SAMN02628504
|
Pre-XDR-TB
|
lineage2.2.1
|
ir
|
ERR11043078
|
MDR-TB
|
lineage4.2.2.1
|
None
|
SRR8369839
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28044360
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR2516575
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR9992790
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR3287871
|
Pre-XDR-TB
|
lineage4.1.2.1
|
pe
|
ERR2307482
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2179782
|
MDR-TB
|
lineage4.5
|
cn
|
SRR6824595
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR11050076
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR28045917
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR7795462
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4830592
|
MDR-TB
|
lineage2.2.1
|
tm
|
ERR11043925
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR11774909
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR6964587
|
MDR-TB
|
lineage3
|
None
|
SRR1166319
|
MDR-TB
|
lineage4.2.1
|
ro
|
SRR5818580
|
MDR-TB
|
lineage4.2.2.1
|
dj
|
ERR4797800
|
MDR-TB
|
lineage4.8
|
in
|
ERR9992623
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR21700933
|
Other
|
lineage4.9
|
None
|
SRR9971308
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR10112860
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9992802
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR9993023
|
XDR-TB
|
lineage2.2.2
|
None
|
SAMN02628478
|
MDR-TB
|
lineage4.4
|
ir
|
SRR10315626
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1165722
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR1166134
|
MDR-TB
|
lineage4.2.1
|
ro
|
SRR14088395
|
MDR-TB
|
lineage3
|
None
|
SRR1167292
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
SRR9971260
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR9971327
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4829000
|
MDR-TB
|
lineage3
|
it
|
ERR7911429
|
MDR-TB
|
lineage2.2.2
|
za
|
ERR9992800
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR4830804
|
MDR-TB
|
lineage4.2.2.1
|
et
|
ERR10680027
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR3287375
|
Pre-XDR-TB
|
lineage4.1.2.1
|
pe
|
SRR29017009
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR5864470
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMEA2535186
|
HR-TB
|
lineage4.1.2.1
|
None
|
ERR4831555
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR25827742
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR13290616
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR1723993
|
MDR-TB
|
lineage4.4.2
|
cn
|
SRR27069395
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29273990
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR11774881
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR28393788
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR1034589
|
Pre-XDR-TB
|
lineage3.1
|
pk
|
ERR1034591
|
Pre-XDR-TB
|
lineage3.1
|
pk
|
ERR2510282
|
Pre-XDR-TB
|
lineage3
|
pk
|
SRR1013555
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2510450
|
MDR-TB
|
lineage3
|
pk
|
ERR4819911
|
MDR-TB
|
lineage4.2.1
|
gb
|
ERR8975738
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4828865
|
MDR-TB
|
lineage4.4.1
|
None
|
ERR3273130
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR8651644
|
Pre-XDR-TB
|
lineage2.2.1.1
|
cn
|
SRR8651578
|
Pre-XDR-TB
|
lineage4.5
|
cn
|
ERR13432060
|
MDR-TB
|
lineage3.1.1
|
None
|
ERR4796878
|
MDR-TB
|
lineage3
|
in
|
SRR28393362
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR29539705
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813205
|
Pre-XDR-TB
|
lineage4.1.2.1
|
pe
|
ERR5865207
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5918118
|
MDR-TB
|
lineage2.2.2
|
za
|
ERR6052027
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR8774142
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR9992805
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR9992886
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR9993016
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR1166933
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR1173500
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR12062481
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR22048551
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR5065550
|
HR-TB
|
lineage2.2.1
|
vn
|
SRR8335026
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11067651
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21700926
|
Other
|
lineage4.9
|
None
|
SRR29017462
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR29273659
|
MDR-TB
|
lineage4.7
|
None
|
SRR6824587
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR13266470
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR5917969
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR13290917
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR29539066
|
MDR-TB
|
lineage2.2.1
|
None
|
DRR130174
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5073818
|
MDR-TB
|
lineage2.2.2
|
vn
|
ERR4872296
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR16370542
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865678
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10680196
|
MDR-TB
|
lineage4.8
|
None
|
ERR688021
|
Pre-XDR-TB
|
lineage3.1
|
None
|
SRR28351250
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR20969572
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13285244
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR4798043
|
MDR-TB
|
lineage4.8
|
in
|
ERR4811328
|
Pre-XDR-TB
|
lineage2.2.2
|
cn
|
SRR10315593
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR10680207
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR133936
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR4831738
|
MDR-TB
|
lineage2.2.2
|
vn
|
SRR1165450
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR9993161
|
XDR-TB
|
lineage2.2.2
|
None
|
SAMN02403507
|
MDR-TB
|
lineage4.4.1.1.1
|
za
|
SAMN02403603
|
MDR-TB
|
lineage4.1.1.1
|
za
|
SAMN02403602
|
Pre-XDR-TB
|
lineage4.1.1.1
|
za
|
SRR1169244
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR2510509
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR1172147
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1166239
|
MDR-TB
|
lineage4.2.1
|
ro
|
ERR2516870
|
MDR-TB
|
lineage1.1.2
|
gb
|
SRR9224911
|
MDR-TB
|
lineage4.1.2
|
None
|
ERR11081756
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9027241
|
MDR-TB
|
lineage3.1.1
|
None
|
ERR2516431
|
Pre-XDR-TB
|
lineage4.1.2.1
|
pe
|
ERR3256114
|
MDR-TB
|
lineage1.2.1.2.1
|
ph
|
ERR403318
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21700922
|
Other
|
lineage4.9
|
None
|
SRR1172852
|
Other
|
lineage1.1.2
|
None
|
ERR4822290
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR1172944
|
MDR-TB
|
lineage4.4
|
None
|
SRR25534575
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6807699
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10680009
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR24256076
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1173397
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR8975007
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1173212
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR12796625
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR553165
|
Other
|
lineage4.1.2.1
|
None
|
SRR12062482
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4830615
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488555
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR9992739
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR9971021
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR9993205
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR29126596
|
MDR-TB
|
lineage3
|
None
|
ERR4827798
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4798519
|
Pre-XDR-TB
|
lineage3
|
in
|
SRR1019148
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR3256174
|
HR-TB
|
lineage1.2.1.2.1
|
ph
|
SRR1723745
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4829831
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
it
|
ERR386893
|
MDR-TB
|
lineage3
|
None
|
SRR2100921
|
MDR-TB
|
lineage3
|
None
|
SRR10315595
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4809333
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2516468
|
MDR-TB
|
lineage4.3.4.2
|
nl
|
ERR5918004
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR12420581
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02403614
|
MDR-TB
|
lineage2.2.2
|
za
|
SRR29274171
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR9119922
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29273841
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR11082442
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR9907672
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR2653194
|
Pre-XDR-TB
|
lineage4.1.2
|
None
|
ERR9993251
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR4798752
|
HR-TB
|
lineage3
|
in
|
SRR11342665
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29274169
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR1165678
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1165707
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR11567801
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR1023480
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4830003
|
MDR-TB
|
lineage4.6.2.2
|
None
|
SRR9971009
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR9119912
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR5987431
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR6052105
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR3273114
|
MDR-TB
|
lineage4.4.2
|
None
|
SRR16370491
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093603
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR21700932
|
Other
|
lineage4.9
|
None
|
SRR21700814
|
Other
|
lineage4.9
|
None
|
ERR13191096
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830632
|
MDR-TB
|
lineage2.2.1
|
tm
|
ERR4276853
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR10040214
|
MDR-TB
|
lineage4.5
|
None
|
ERR5758444
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR10748475
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29274170
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR8975920
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR27107273
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2516995
|
Pre-XDR-TB
|
lineage4.2.1
|
gb
|
SRR1166332
|
MDR-TB
|
lineage4.2.1
|
ro
|
ERR13291384
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR11972203
|
HR-TB
|
lineage2.2.1.1
|
None
|
SRR28119759
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10525354
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR10680144
|
MDR-TB
|
lineage4.9
|
None
|
ERR4813095
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR18715339
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9993005
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR28351461
|
MDR-TB
|
lineage3
|
None
|
SRR25534331
|
MDR-TB
|
lineage2.2.1.2
|
None
|
SRR6896174
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR5864473
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866232
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR108447
|
HR-TB
|
lineage2.2.1
|
ru
|
SRR11349164
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1165238
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR21700940
|
Other
|
lineage4.9
|
None
|
ERR4816369
|
Pre-XDR-TB
|
lineage4.2.1
|
gb
|
ERR2197001
|
MDR-TB
|
lineage4.5
|
None
|
ERR8025768
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR25207105
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284497
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488724
|
Pre-XDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR11488728
|
Pre-XDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR5864472
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8651581
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR4553924
|
HR-TB
|
lineage1.1.3.1
|
None
|
SRR8377831
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796703
|
MDR-TB
|
lineage4.8
|
in
|
SRR6824637
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR9992953
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR9992688
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR7737737
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4830920
|
Pre-XDR-TB
|
lineage4.1.1.3
|
np
|
SRR10306018
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488774
|
MDR-TB
|
lineage1.1.3.1
|
None
|
ERR9993028
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR5897072
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR10869260
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR5710016
|
Pre-XDR-TB
|
lineage2.2.1.1
|
th
|
ERR9993247
|
XDR-TB
|
lineage2.2.2
|
None
|
SAMN02350473
|
MDR-TB
|
lineage2.2.2
|
za
|
ERR5987402
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4553708
|
MDR-TB
|
lineage2.2
|
None
|
ERR4830647
|
MDR-TB
|
lineage2.2.1
|
tm
|
SRR9971075
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR8351971
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3082137
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR9971353
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4816602
|
HR-TB
|
lineage4.1.2.1
|
None
|
ERR13266546
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13289387
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR6785251
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9993132
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR3732578
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29273945
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR11488671
|
Pre-XDR-TB
|
lineage4.3.4.2.1
|
None
|
SAMN02350470
|
MDR-TB
|
lineage2.2.2
|
za
|
SRR14782567
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR9993160
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR21700938
|
Other
|
lineage4.9
|
None
|
SRR21700919
|
Other
|
lineage4.9
|
None
|
ERR5865677
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4812952
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR1140916
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR7911724
|
MDR-TB
|
lineage2.2.1
|
us
|
ERR8774144
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR9907773
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4830884
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR3743481
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10525341
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR9993024
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR9907786
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR4799796
|
XDR-TB
|
lineage4.8
|
in
|
SRR27450380
|
HR-TB
|
lineage2.2.1
|
None
|
ERR2179653
|
MDR-TB
|
lineage4.4.2
|
cn
|
SRR5818655
|
MDR-TB
|
lineage4.2.2.2
|
dj
|
SRR1011522
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR23691415
|
RR-TB
|
lineage2.2.1
|
None
|
SRR1013556
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR6964610
|
MDR-TB
|
lineage4.8
|
None
|
ERR4276854
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR9993242
|
XDR-TB
|
lineage2.2.2
|
None
|
SAMN02403451
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR9738500
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR29056152
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR4830627
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10112886
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR13870385
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4831727
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR9993099
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR13252191
|
MDR-TB
|
lineage4.9
|
None
|
ERR10748434
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR270738
|
MDR-TB
|
lineage3
|
None
|
SRR29096515
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4796751
|
MDR-TB
|
lineage2.2.1
|
in
|
SAMN02628505
|
Pre-XDR-TB
|
lineage2.2.1
|
ir
|
SRR1011518
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR4813132
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR7911218
|
Pre-XDR-TB
|
lineage2.2.1
|
md
|
SRR24710188
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21576632
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1140947
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1019152
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR9786533
|
MDR-TB
|
lineage4.7
|
None
|
ERR9992616
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR3287769
|
MDR-TB
|
lineage4.1.1
|
pe
|
ERR133916
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR25207156
|
MDR-TB
|
lineage4.2.2
|
None
|
SRR8353479
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16157098
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2516791
|
MDR-TB
|
lineage3
|
gb
|
ERR11488554
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR13266714
|
XDR-TB
|
lineage3
|
None
|
ERR9992855
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR13870372
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR8699844
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR11567799
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR4830565
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR8975019
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1165268
|
MDR-TB
|
lineage4.4.1.1.1
|
None
|
ERR9993256
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR5866233
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866234
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799169
|
Pre-XDR-TB
|
lineage4.8
|
in
|
ERR4553731
|
HR-TB
|
lineage2.2
|
None
|
ERR5917987
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR11342664
|
MDR-TB
|
lineage2.2.2
|
None
|
SAMN02403442
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR5865926
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813096
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR5153911
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29440611
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
ERR6865775
|
Pre-XDR-TB
|
lineage4.1.1;lineage4.1.2.1
|
None
|
SRR21700815
|
Other
|
lineage4.9
|
None
|
ERR13281466
|
MDR-TB
|
lineage4.2.2.1;lineage5
|
None
|
ERR2677413
|
MDR-TB
|
lineage4.2.1
|
de
|
SRR11662441
|
MDR-TB
|
lineage4.2.2
|
None
|
ERR688023
|
Pre-XDR-TB
|
lineage3.1
|
None
|
SRR15368765
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4407496
|
MDR-TB
|
lineage2.2.1
|
None
|
DRR130156
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR067674
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR9992626
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR25827360
|
Pre-XDR-TB
|
lineage3;lineage4
|
None
|
DRR130205
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR18002984
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR10525365
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR2184286
|
Pre-XDR-TB
|
lineage4.1.2.1
|
pe
|
ERR2653131
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR278534
|
MDR-TB
|
lineage3
|
None
|
SRR12062544
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR502940
|
MDR-TB
|
lineage4.2.2
|
None
|
ERR4800692
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831756
|
MDR-TB
|
lineage2.2.2
|
vn
|
ERR4821159
|
MDR-TB
|
lineage4.2.2.1
|
gb
|
ERR3287419
|
Pre-XDR-TB
|
lineage4.1.2.1
|
pe
|
SRR833219
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR21700934
|
Other
|
lineage4.9
|
None
|
ERR4831445
|
MDR-TB
|
lineage3
|
None
|
ERR9119913
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR8975519
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9119739
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4796975
|
MDR-TB
|
lineage4.4.1.1
|
in
|
SAMN02628529
|
MDR-TB
|
lineage4.4
|
ir
|
SRR18054809
|
Pre-XDR-TB
|
lineage4.4
|
None
|
SRR10397132
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16370570
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865209
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2179670
|
MDR-TB
|
lineage4.2.2
|
cn
|
SRR26558631
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1019192
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR5341428
|
Pre-XDR-TB
|
lineage3
|
in
|
SRR21576658
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29273993
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR3273146
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4817015
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR4813104
|
Pre-XDR-TB
|
lineage4.1.2.1
|
pe
|
SRR9971324
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR6896343
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR11662437
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552091
|
Other
|
lineage4.2.2.1
|
de
|
SRR6831746
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11773813
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR6397200
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR7911211
|
MDR-TB
|
lineage2.2.2
|
za
|
ERR9993261
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR4800575
|
Pre-XDR-TB
|
lineage3
|
in
|
SRR1173305
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13284579
|
MDR-TB
|
lineage4.2.2.1
|
None
|
SRR1180218
|
MDR-TB
|
lineage4.4
|
None
|
SRR12062485
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR6485003
|
HR-TB
|
lineage2.2.1
|
None
|
ERR13289721
|
MDR-TB
|
lineage3
|
None
|
SRR14088384
|
MDR-TB
|
lineage3
|
None
|
ERR9993257
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11082434
|
MDR-TB
|
lineage3.1
|
None
|
ERR2510457
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR27107289
|
MDR-TB
|
lineage4.8
|
None
|
ERR9992628
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR20969553
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR17163495
|
MDR-TB
|
lineage3.1.1
|
None
|
SRR1173082
|
Other
|
lineage1.1.2
|
None
|
ERR13284267
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR4828858
|
MDR-TB
|
lineage4.8
|
None
|
SRR29096584
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11043189
|
MDR-TB
|
lineage3
|
None
|
ERR4822371
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040502
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3725693
|
MDR-TB
|
lineage4.1.3
|
None
|
SRR11972411
|
HR-TB
|
lineage2.2.1
|
None
|
ERR5917992
|
XDR-TB
|
lineage2.2.2
|
za
|
ERR9907800
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1173875
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992768
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR29096494
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29539855
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1723812
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR2677427
|
MDR-TB
|
lineage2.2.1
|
de
|
SRR21700925
|
Other
|
lineage4.9
|
None
|
ERR4820541
|
HR-TB
|
lineage4.1.2.1
|
gb
|
SRR29273753
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR29017070
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR4423552
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR4553437
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR4829092
|
MDR-TB
|
lineage4.2.2.2
|
dj
|
ERR4813117
|
XDR-TB
|
lineage4.1.2.1
|
None
|
SRR1167310
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10315594
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR10762415
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29080993
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
SRR16149133
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR3287862
|
Pre-XDR-TB
|
lineage4.1.2.1
|
pe
|
ERR9993187
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR4818892
|
MDR-TB
|
lineage4.2.2.1
|
None
|
ERR10762322
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11349159
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13260501
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR10680160
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR10808791
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4831586
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR7911180
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR5074155
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR5153924
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1183118
|
MDR-TB
|
lineage4.4
|
None
|
ERR3323721
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR6824405
|
MDR-TB
|
lineage4.2.2
|
cn
|
ERR9119785
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR13870394
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR7911034
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR4798005
|
Pre-XDR-TB
|
lineage4.8
|
in
|
ERR4423551
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR4813177
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR1173405
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR671797
|
Pre-XDR-TB
|
lineage2.2.2
|
cn
|
SRR22175264
|
XDR-TB
|
lineage4.1.2.1
|
None
|
SRR10808626
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR6832474
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4178219
|
Pre-XDR-TB
|
lineage4.1.1;lineage4.1.2.1
|
None
|
ERR13260281
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR9971028
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4815445
|
Pre-XDR-TB
|
lineage4.2.1
|
gb
|
SRR9971323
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR23861925
|
Other
|
lineage4.3.3
|
None
|
ERR9992883
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2653174
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR11773746
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR12117972
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR10748260
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4830504
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR6824331
|
MDR-TB
|
lineage4.4.2
|
cn
|
ERR13284927
|
MDR-TB
|
lineage3
|
None
|
SRR24709922
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828278
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
ERR13191097
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13276229
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR13290615
|
MDR-TB
|
lineage4.2.2.2
|
None
|
SRR12420270
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR7592352
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR5865208
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748255
|
MDR-TB
|
lineage2.2.2
|
None
|
SAMN02599175
|
Other
|
lineage1.1.2
|
in
|
ERR4797359
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR15316361
|
MDR-TB
|
lineage4.4.2
|
None
|
SRR21700920
|
Other
|
lineage4.9
|
None
|
ERR2510546
|
Pre-XDR-TB
|
lineage3.1.2.1
|
None
|
ERR11465527
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR1167358
|
MDR-TB
|
lineage4.1.1.1
|
None
|
SRR21700935
|
Other
|
lineage4.9
|
None
|
SRR25207353
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2515144
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR5987207
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7910894
|
MDR-TB
|
lineage4.2.1
|
md
|
ERR553166
|
HR-TB
|
lineage4.1.2.1
|
None
|
ERR4830566
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9992847
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR9993004
|
XDR-TB
|
lineage2.2.2
|
None
|
SAMN02414974
|
MDR-TB
|
lineage4.2.2.2
|
se
|
ERR4799493
|
Pre-XDR-TB
|
lineage3
|
in
|
SRR1165692
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR1048854
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10040137
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7795464
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR21700817
|
Other
|
lineage4.9
|
None
|
SRR21700937
|
Other
|
lineage4.9
|
None
|
ERR9992773
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR2677387
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
SRR6356968
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6356977
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13288796
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR25207198
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9119902
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR10680194
|
MDR-TB
|
lineage4.8
|
None
|
SRR2101307
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR137242
|
HR-TB
|
lineage2.2.1
|
ru
|
SRR29274158
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR4799300
|
Pre-XDR-TB
|
lineage4.8
|
in
|
SRR8552927
|
MDR-TB
|
lineage3
|
None
|
SRR1173131
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1173137
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
DRR130160
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21700936
|
Other
|
lineage4.9
|
None
|
SRR1169283
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR25827605
|
Pre-XDR-TB
|
lineage2.2.1;lineage3;lineage4
|
None
|
ERR2516738
|
XDR-TB
|
lineage4.1.2.1
|
pe
|
ERR9119867
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR21700931
|
Other
|
lineage4.9
|
None
|
ERR10748244
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4828063
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10680218
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR21887735
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351662
|
MDR-TB
|
lineage3
|
None
|
ERR137259
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR3256273
|
HR-TB
|
lineage1.2.1.2
|
ph
|
ERR108450
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR10315729
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR2510448
|
MDR-TB
|
lineage1.2.2.2
|
pk
|
SRR1172713
|
MDR-TB
|
lineage4.4
|
None
|
ERR3335735
|
Pre-XDR-TB
|
lineage3.1.3
|
pk
|
ERR5987233
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR4831757
|
MDR-TB
|
lineage2.2.2
|
vn
|
ERR9992714
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR21700930
|
Other
|
lineage4.9
|
None
|
ERR10680039
|
RR-TB
|
lineage3
|
None
|
ERR11081389
|
MDR-TB
|
lineage4.2.2.1
|
None
|
SRR27107266
|
MDR-TB
|
lineage4.8
|
None
|
SRR9971305
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10869182
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR18593215
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR1166108
|
MDR-TB
|
lineage4.2.1
|
ro
|
SRR21677637
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR5987372
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9992995
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1173192
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23311000
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4812869
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR5865622
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10680217
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR25207280
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR1723691
|
Pre-XDR-TB
|
lineage2.2.1.1
|
cn
|
ERR9993025
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR553164
|
Other
|
lineage4.1.2.1
|
None
|
ERR11082293
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR27107250
|
MDR-TB
|
lineage4.8
|
None
|
ERR2653173
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR2864242
|
MDR-TB
|
lineage4.2.1
|
pt
|
ERR13288849
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR13286201
|
Pre-XDR-TB
|
lineage2.2.2;lineage4.3.3
|
None
|
ERR4011975
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR5067419
|
HR-TB
|
lineage2.2.2
|
vn
|
SRR9971029
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR8975618
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
ERR9030270
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5917984
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR2307630
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|