Run ID: SRR23861985
Sample name:
Date: 12-04-2023 13:23:37
Number of reads: 4626417
Percentage reads mapped: 99.5
Strain: lineage4.2.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|---|---|
Rifampicin | ||
Isoniazid | ||
Ethambutol | ||
Pyrazinamide | ||
Streptomycin | ||
Fluoroquinolones | ||
Moxifloxacin | ||
Ofloxacin | ||
Levofloxacin | ||
Ciprofloxacin | ||
Aminoglycosides | ||
Amikacin | ||
Capreomycin | ||
Kanamycin | ||
Cycloserine | ||
Ethionamide | ||
Clofazimine | ||
Para-aminosalicylic_acid | ||
Delamanid | ||
Bedaquiline | ||
Linezolid |
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.2 | Euro-American | H;T;LAM | None | 0.89 |
lineage4.2.1 | Euro-American (TUR) | H3;H4 | None | 0.89 |
lineage4.2.1.1 | Euro-American (TUR) | H3;H4 | None | 0.87 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 0.89 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 0.89 |
mshA | 576077 | p.Leu244Val | missense_variant | 0.14 |
mshA | 576093 | p.Pro249Arg | missense_variant | 0.21 |
mshA | 576119 | p.Ala258Pro | missense_variant | 0.13 |
ccsA | 620059 | p.Asp57His | missense_variant | 0.15 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 777451 | p.Val344Leu | missense_variant | 0.89 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471647 | n.-199G>A | upstream_gene_variant | 0.91 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475919 | n.2262C>A | non_coding_transcript_exon_variant | 0.84 |
inhA | 1673970 | c.-232C>A | upstream_gene_variant | 0.71 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2169879 | p.Phe245Cys | missense_variant | 0.87 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086742 | c.-78A>C | upstream_gene_variant | 0.86 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 0.85 |
fbiD | 3339739 | p.Ala208Pro | missense_variant | 0.14 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 0.93 |
whiB7 | 3568416 | p.Lys88His | missense_variant | 0.13 |
whiB7 | 3568428 | c.252A>C | synonymous_variant | 0.18 |
clpC1 | 4040235 | p.Gly157Ala | missense_variant | 0.19 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embB | 4246574 | p.Ala21Ser | missense_variant | 0.13 |
embB | 4247013 | p.Pro167Arg | missense_variant | 0.15 |
embB | 4247016 | p.Ser168Trp | missense_variant | 0.15 |
ethR | 4328030 | p.Ala161Gly | missense_variant | 0.16 |
ethR | 4328045 | p.Leu166Gln | missense_variant | 0.17 |
ethR | 4328060 | p.Leu171Gln | missense_variant | 0.15 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408213 | c.-11C>T | upstream_gene_variant | 0.91 |