Run ID: SRR4033103
Sample name:
Date: 04-04-2023 05:49:13
Number of reads: 1035064
Percentage reads mapped: 99.43
Strain: lineage4.1.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7323 | p.Pro8Ala | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575473 | c.126C>T | synonymous_variant | 0.12 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 763845 | p.Arg159His | missense_variant | 0.13 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
rpoC | 765509 | p.Asp714Asn | missense_variant | 0.11 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776659 | p.Asp608Asn | missense_variant | 0.98 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1302810 | c.-121C>T | upstream_gene_variant | 0.11 |
Rv1258c | 1407168 | p.Ala58Val | missense_variant | 0.25 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918461 | c.522C>T | synonymous_variant | 0.11 |
ndh | 2102375 | p.Pro223Leu | missense_variant | 0.12 |
katG | 2155607 | p.Gly169Ser | missense_variant | 0.18 |
PPE35 | 2168501 | p.Phe704Leu | missense_variant | 1.0 |
PPE35 | 2169320 | p.Leu431Phe | missense_variant | 0.16 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2288824 | p.Arg140Cys | missense_variant | 0.11 |
pncA | 2289981 | c.-740T>C | upstream_gene_variant | 0.13 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
eis | 2714645 | p.Arg230Cys | missense_variant | 0.11 |
pepQ | 2859572 | p.Asp283Asn | missense_variant | 0.12 |
thyX | 3067551 | p.Leu132Pro | missense_variant | 0.12 |
thyA | 3073806 | c.666C>G | synonymous_variant | 0.3 |
thyA | 3074047 | p.Ala142Val | missense_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339086 | c.-31delC | upstream_gene_variant | 0.11 |
Rv3083 | 3448629 | c.126C>T | synonymous_variant | 0.15 |
Rv3083 | 3449061 | c.558C>T | synonymous_variant | 0.14 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
rpoA | 3878381 | c.127C>T | synonymous_variant | 1.0 |
embC | 4242425 | p.Arg855Gly | missense_variant | 0.29 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4243290 | p.Ser20Ala | missense_variant | 1.0 |
embB | 4247121 | p.Ser203Leu | missense_variant | 1.0 |
embB | 4248405 | p.Ala631Val | missense_variant | 0.15 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408397 | c.-195A>G | upstream_gene_variant | 1.0 |