Run ID: SRR4033146
Sample name:
Date: 04-04-2023 05:51:22
Number of reads: 1382121
Percentage reads mapped: 99.45
Strain: lineage4.1.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7323 | p.Pro8Ala | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8661 | p.Asp454Asn | missense_variant | 0.13 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491411 | p.Ala210Val | missense_variant | 0.15 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
ccsA | 620714 | p.Tyr275Cys | missense_variant | 0.11 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 764374 | c.1005C>T | synonymous_variant | 0.11 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
rpoC | 765383 | p.Met672Val | missense_variant | 0.11 |
rpoC | 766917 | p.Arg1183His | missense_variant | 0.14 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776659 | p.Asp608Asn | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168501 | p.Phe704Leu | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
eis | 2714729 | p.Ala202Thr | missense_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087830 | c.1011G>A | synonymous_variant | 0.18 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiB | 3642695 | c.1161G>A | synonymous_variant | 0.11 |
rpoA | 3878381 | c.127C>T | synonymous_variant | 1.0 |
embC | 4242044 | p.Ile728Phe | missense_variant | 0.11 |
embC | 4242462 | p.Gly867Asp | missense_variant | 0.11 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4243290 | p.Ser20Ala | missense_variant | 1.0 |
embB | 4247121 | p.Ser203Leu | missense_variant | 1.0 |
embB | 4247640 | p.Ala376Val | missense_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408397 | c.-195A>G | upstream_gene_variant | 1.0 |
gid | 4408413 | c.-211C>T | upstream_gene_variant | 0.13 |