Run ID: SRR4033592
Sample name:
Date: 04-04-2023 06:12:01
Number of reads: 695496
Percentage reads mapped: 99.48
Strain: lineage4.1.2
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.2 | Euro-American | T;H | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7323 | p.Pro8Ala | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 490973 | p.Arg64His | missense_variant | 0.18 |
fgd1 | 491591 | p.Lys270Met | missense_variant | 1.0 |
mshA | 575163 | c.-185T>C | upstream_gene_variant | 0.22 |
mshA | 576680 | p.Ile445Val | missense_variant | 0.18 |
ccsA | 620748 | c.858T>G | synonymous_variant | 0.22 |
rpoB | 760115 | c.309C>T | synonymous_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776659 | p.Asp608Asn | missense_variant | 0.89 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1304554 | p.Asp542Asn | missense_variant | 0.25 |
embR | 1417176 | p.Ala58Ser | missense_variant | 0.17 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
PPE35 | 2168501 | p.Phe704Leu | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518076 | c.-39C>T | upstream_gene_variant | 1.0 |
pepQ | 2860369 | p.Ser17Phe | missense_variant | 0.1 |
ribD | 2987501 | c.663C>T | synonymous_variant | 0.22 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fprA | 3474375 | c.369C>T | synonymous_variant | 0.13 |
Rv3236c | 3612835 | c.282T>G | synonymous_variant | 0.25 |
rpoA | 3878381 | c.127C>T | synonymous_variant | 1.0 |
clpC1 | 4039674 | p.Pro344Leu | missense_variant | 0.22 |
panD | 4044327 | c.-46G>A | upstream_gene_variant | 0.12 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embA | 4243290 | p.Ser20Ala | missense_variant | 0.95 |
embB | 4247121 | p.Ser203Leu | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407740 | p.Pro155Ser | missense_variant | 0.11 |
gid | 4408397 | c.-195A>G | upstream_gene_variant | 1.0 |