Run ID: SRR5341259
Sample name:
Date: 04-04-2023 10:11:51
Number of reads: 901163
Percentage reads mapped: 99.51
Strain: lineage2.2.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 0.88 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 0.9 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 0.91 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
folC | 2747471 | p.Ile43Thr | missense_variant | 0.12 | para-aminosalicylic_acid |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8685 | p.Ile462Val | missense_variant | 0.85 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 0.78 |
mshA | 576751 | p.Lys468Asn | missense_variant | 0.29 |
ccsA | 620625 | p.Ile245Met | missense_variant | 0.89 |
rpoB | 759615 | c.-192A>C | upstream_gene_variant | 0.25 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 0.95 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303016 | p.Val29Gly | missense_variant | 0.19 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 0.86 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
fabG1 | 1673380 | c.-60C>G | upstream_gene_variant | 0.21 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 0.91 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2169485 | c.1120_1127delGTTGGGAA | frameshift_variant | 0.13 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.44 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.44 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 0.16 |
ahpC | 2726338 | p.Val49Gly | missense_variant | 0.22 |
ahpC | 2726341 | p.Val50Gly | missense_variant | 0.27 |
Rv2752c | 3065315 | p.Glu293* | stop_gained | 0.17 |
thyX | 3067467 | p.Ala160Val | missense_variant | 0.86 |
thyX | 3068145 | c.-200C>A | upstream_gene_variant | 0.91 |
thyA | 3074641 | c.-170C>T | upstream_gene_variant | 0.33 |
thyA | 3074645 | c.-174T>G | upstream_gene_variant | 0.3 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 0.78 |
alr | 3840298 | c.1122delC | frameshift_variant | 0.12 |
clpC1 | 4039484 | c.1221T>G | synonymous_variant | 0.28 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embA | 4245453 | p.Ala741Ser | missense_variant | 0.11 |
embB | 4246544 | p.Thr11Pro | missense_variant | 0.11 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 0.96 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 0.9 |