Run ID: SRR6280270
Sample name:
Date: 12-08-2022 04:39:13
Number of reads: 6884985
Percentage reads mapped: 92.26
Strain: lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 0.99 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpL5 | 777008 | c.1471_1472delCC | frameshift_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472128 | n.283G>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472129 | n.284G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472135 | n.290C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472138 | n.293C>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472147 | n.302G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472148 | n.303T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472153 | n.308G>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472210 | n.365A>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 0.19 |
rrs | 1472240 | n.395G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474888 | n.1231C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.43 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.44 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.42 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.32 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476411 | n.2754G>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476463 | n.2806C>A | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476470 | n.2813C>T | non_coding_transcript_exon_variant | 0.2 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 0.99 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |