Run ID: SRR6855771
Sample name:
Date: 04-04-2023 17:45:07
Number of reads: 547251
Percentage reads mapped: 99.66
Strain: lineage4.4.1.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.4 | Euro-American | S;T | None | 1.0 |
lineage4.4.1 | Euro-American (S-type) | S;T | None | 1.0 |
lineage4.4.1.1 | Euro-American | S;Orphans | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5309 | p.Glu24Lys | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
mshA | 576557 | p.His404Asp | missense_variant | 0.12 |
mshA | 576664 | c.1317C>A | synonymous_variant | 0.12 |
ccsA | 619798 | c.-93G>T | upstream_gene_variant | 0.17 |
rpoB | 761504 | c.1698C>A | synonymous_variant | 0.13 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102990 | p.Val18Ala | missense_variant | 1.0 |
katG | 2155737 | c.375C>A | synonymous_variant | 0.1 |
PPE35 | 2167855 | c.2757delG | frameshift_variant | 0.15 |
PPE35 | 2169840 | p.Gly258Asp | missense_variant | 1.0 |
PPE35 | 2170113 | p.Ala167Glu | missense_variant | 0.12 |
Rv1979c | 2222341 | p.Met275Thr | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2290237 | c.-999_-997delAGA | upstream_gene_variant | 0.12 |
thyA | 3074515 | c.-44T>C | upstream_gene_variant | 0.1 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
Rv3083 | 3448608 | c.105G>A | synonymous_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612191 | p.Gly309Val | missense_variant | 0.18 |
Rv3236c | 3612228 | p.Leu297Met | missense_variant | 0.17 |
Rv3236c | 3612665 | p.Val151Ala | missense_variant | 1.0 |
fbiB | 3641010 | c.-525C>T | upstream_gene_variant | 1.0 |
rpoA | 3878699 | c.-192C>A | upstream_gene_variant | 0.4 |
embC | 4240540 | c.678C>A | synonymous_variant | 0.14 |
embC | 4240962 | c.1104delG | frameshift_variant | 0.14 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245512 | c.2280G>C | synonymous_variant | 1.0 |
embA | 4245557 | p.Glu775Asp | missense_variant | 0.13 |
embB | 4246825 | p.Lys104Asn | missense_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |