Run ID: SRR6981953
Sample name:
Date: 04-04-2023 18:23:00
Number of reads: 518326
Percentage reads mapped: 98.78
Strain: lineage2.2.1
Drug-resistance: HR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 0.98 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
katG | 2155734 | p.Met126Ile | missense_variant | 0.12 | isoniazid |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6798 | p.Gly520Asp | missense_variant | 0.11 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 0.96 |
fgd1 | 491346 | c.564C>A | synonymous_variant | 0.12 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575451 | p.Asn35Ser | missense_variant | 0.15 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
mshA | 576576 | p.Ala410Asp | missense_variant | 0.11 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoB | 762763 | p.Thr986Met | missense_variant | 0.15 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 0.95 |
rpoC | 765816 | p.Thr816Met | missense_variant | 0.11 |
rpoC | 767108 | p.Gly1247Cys | missense_variant | 0.14 |
rpoC | 767212 | c.3843G>T | synonymous_variant | 0.13 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1473596 | n.-62G>T | upstream_gene_variant | 0.13 |
rrl | 1473939 | n.282C>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1473999 | n.342C>T | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474134 | n.477G>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1474523 | n.868_869dupAC | non_coding_transcript_exon_variant | 0.12 |
fabG1 | 1673298 | c.-142A>C | upstream_gene_variant | 0.12 |
fabG1 | 1673471 | p.Pro11His | missense_variant | 0.14 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918621 | p.Ser228Gly | missense_variant | 0.1 |
katG | 2154724 | p.Arg463Leu | missense_variant | 0.94 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2170348 | p.Gln89Lys | missense_variant | 0.4 |
Rv1979c | 2222916 | c.246_248delAAC | disruptive_inframe_deletion | 0.11 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289282 | c.-41G>T | upstream_gene_variant | 0.11 |
pncA | 2289421 | c.-180C>A | upstream_gene_variant | 0.11 |
kasA | 2518175 | p.Ala21Ser | missense_variant | 0.11 |
pepQ | 2859330 | c.1089C>A | synonymous_variant | 0.11 |
thyX | 3067584 | p.Gly121Asp | missense_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 0.82 |
fbiA | 3641332 | p.Gly264Arg | missense_variant | 1.0 |
fbiB | 3641541 | p.Gly3Cys | missense_variant | 0.14 |
embC | 4242333 | p.Gly824Val | missense_variant | 0.17 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243213 | c.-20G>A | upstream_gene_variant | 0.11 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embB | 4247991 | c.1479delG | frameshift_variant | 0.11 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
ethR | 4327942 | p.Val132Ile | missense_variant | 0.15 |
whiB6 | 4338367 | c.154delC | frameshift_variant | 0.11 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407827 | p.Asp126Tyr | missense_variant | 0.14 |
gid | 4407847 | p.Ala119Gly | missense_variant | 0.12 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |
gid | 4408131 | c.72A>G | synonymous_variant | 0.11 |