Run ID: SRR6982310
Sample name:
Date: 04-04-2023 18:33:44
Number of reads: 470712
Percentage reads mapped: 99.54
Strain: lineage2.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 1.0 |
lineage2.2 | East-Asian (Beijing) | Beijing-RD207 | RD105;RD207 | 1.0 |
lineage2.2.1 | East-Asian (Beijing) | Beijing-RD181 | RD105;RD207;RD181 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575907 | p.Ala187Val | missense_variant | 1.0 |
ccsA | 620625 | p.Ile245Met | missense_variant | 1.0 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 775755 | c.2725delA | frameshift_variant | 0.15 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776182 | p.Asp767Asn | missense_variant | 1.0 |
mmpL5 | 777397 | p.Ser362Cys | missense_variant | 0.17 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
fbiC | 1303528 | p.Glu200* | stop_gained | 0.12 |
fbiC | 1303805 | p.Val292Glu | missense_variant | 0.1 |
Rv1258c | 1406652 | p.Met230Thr | missense_variant | 0.12 |
Rv1258c | 1406760 | c.580_581insC | frameshift_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrl | 1475195 | n.1538G>A | non_coding_transcript_exon_variant | 0.12 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
rpsA | 1834850 | p.Ala437Ser | missense_variant | 0.15 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918376 | p.Gly146Val | missense_variant | 0.1 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
PPE35 | 2168028 | p.Pro862Arg | missense_variant | 0.12 |
PPE35 | 2168524 | p.Gly697Cys | missense_variant | 0.11 |
Rv1979c | 2222653 | p.Ala171Glu | missense_variant | 0.1 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518408 | c.294C>T | synonymous_variant | 0.12 |
kasA | 2518606 | c.492G>C | synonymous_variant | 0.14 |
kasA | 2518609 | p.Met165Ile | missense_variant | 0.14 |
kasA | 2518720 | c.606C>A | synonymous_variant | 0.14 |
kasA | 2518732 | c.618C>T | synonymous_variant | 0.18 |
eis | 2714651 | p.Val228Met | missense_variant | 0.12 |
eis | 2714751 | p.Gln194His | missense_variant | 0.11 |
eis | 2714996 | p.Tyr113Asp | missense_variant | 0.11 |
ribD | 2987158 | p.Gln107Arg | missense_variant | 0.12 |
Rv2752c | 3067131 | c.-940G>A | upstream_gene_variant | 0.12 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339705 | c.588G>T | synonymous_variant | 0.18 |
Rv3083 | 3448948 | p.Tyr149His | missense_variant | 0.15 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
rpoA | 3878420 | p.Phe30Leu | missense_variant | 0.33 |
embA | 4242403 | c.-830T>G | upstream_gene_variant | 0.22 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embA | 4244184 | p.Ser318Leu | missense_variant | 0.19 |
embA | 4245385 | p.Thr718Asn | missense_variant | 0.12 |
embB | 4249257 | p.Arg915Leu | missense_variant | 0.22 |
embB | 4249286 | p.Gln925* | stop_gained | 0.17 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 1.0 |
aftB | 4268622 | p.Trp72Leu | missense_variant | 0.13 |
whiB6 | 4338567 | c.-46C>T | upstream_gene_variant | 0.12 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |