Run ID: SRR6982476
Sample name:
Date: 04-04-2023 18:38:35
Number of reads: 424140
Percentage reads mapped: 99.21
Strain: lineage4.3.2.1
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.3 | Euro-American (LAM) | mainly-LAM | None | 1.0 |
lineage4.3.2 | Euro-American (LAM) | LAM3 | None | 1.0 |
lineage4.3.2.1 | Euro-American (LAM) | LAM3 | RD761 | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5520 | p.Pro94Leu | missense_variant | 1.0 |
gyrA | 7222 | c.-80C>T | upstream_gene_variant | 1.0 |
gyrB | 7237 | p.Asn666Lys | missense_variant | 0.12 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7691 | c.390C>T | synonymous_variant | 0.14 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 764995 | c.1626C>G | synonymous_variant | 1.0 |
rpoC | 765213 | p.Pro615Leu | missense_variant | 0.13 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpR5 | 779356 | p.Arg123Trp | missense_variant | 0.11 |
mmpR5 | 779399 | p.Arg137Leu | missense_variant | 0.11 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1416714 | p.Ile212Val | missense_variant | 0.13 |
atpE | 1461041 | c.-4G>T | upstream_gene_variant | 0.1 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472054 | n.209G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472337 | n.492C>T | non_coding_transcript_exon_variant | 1.0 |
rrl | 1475513 | n.1856T>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475841 | n.2184T>C | non_coding_transcript_exon_variant | 0.12 |
fabG1 | 1674034 | p.Gln199Lys | missense_variant | 0.11 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
ndh | 2102145 | p.Ala300Thr | missense_variant | 0.15 |
PPE35 | 2168467 | p.Leu716Ile | missense_variant | 0.12 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2288895 | c.338_346delGCACGCCAC | disruptive_inframe_deletion | 0.33 |
pncA | 2289466 | c.-225T>A | upstream_gene_variant | 0.13 |
pncA | 2290214 | c.-973T>C | upstream_gene_variant | 0.25 |
ahpC | 2726013 | c.-179delA | upstream_gene_variant | 0.1 |
folC | 2747202 | c.397C>T | synonymous_variant | 0.12 |
ribD | 2987498 | c.660C>A | synonymous_variant | 0.15 |
thyX | 3067806 | p.Trp47Leu | missense_variant | 0.11 |
thyX | 3067964 | c.-19C>A | upstream_gene_variant | 0.15 |
thyA | 3073868 | p.Thr202Ala | missense_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
ald | 3087741 | p.Thr308Ala | missense_variant | 0.18 |
fbiD | 3338968 | c.-150A>G | upstream_gene_variant | 0.22 |
fbiD | 3339256 | c.139T>C | synonymous_variant | 0.14 |
fprA | 3473837 | c.-170A>G | upstream_gene_variant | 0.11 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
whiB7 | 3568795 | c.-116A>G | upstream_gene_variant | 0.11 |
fbiA | 3640406 | c.-137G>T | upstream_gene_variant | 0.13 |
fbiA | 3640654 | p.Asp38Tyr | missense_variant | 0.22 |
fbiB | 3641813 | p.Leu93Phe | missense_variant | 0.23 |
rpoA | 3877628 | p.Ile294Val | missense_variant | 0.13 |
clpC1 | 4038287 | c.2418C>T | synonymous_variant | 1.0 |
embC | 4240543 | c.681G>A | synonymous_variant | 0.17 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4245080 | p.Trp616* | stop_gained | 0.12 |
embA | 4245482 | c.2250G>A | synonymous_variant | 0.18 |
embB | 4247002 | c.489G>A | synonymous_variant | 0.11 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4408156 | p.Leu16Arg | missense_variant | 1.0 |
gid | 4408315 | c.-113C>T | upstream_gene_variant | 0.14 |