Run ID: SRR7131158
Sample name:
Date: 04-04-2023 18:47:16
Number of reads: 2063472
Percentage reads mapped: 99.99
Strain: lineage4.1.1
Drug-resistance: HR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 6052 | p.Ile271Met | missense_variant | 1.0 |
gyrB | 7221 | p.Ser661Thr | missense_variant | 1.0 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
embR | 1416699 | p.Leu217Val | missense_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472952 | n.1107T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472987 | n.1142G>A | non_coding_transcript_exon_variant | 0.13 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473316 | n.1471C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474353 | n.696A>C | non_coding_transcript_exon_variant | 1.0 |
rrl | 1474537 | n.880G>A | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475883 | n.2226A>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475884 | n.2227A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475896 | n.2239A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475897 | n.2240T>C | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475898 | n.2241A>G | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475899 | n.2242G>A | non_coding_transcript_exon_variant | 0.13 |
rrl | 1475943 | n.2286G>A | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475952 | n.2295A>G | non_coding_transcript_exon_variant | 0.11 |
rrl | 1475970 | n.2313C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1475975 | n.2318C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475977 | n.2320A>G | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.12 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.14 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
thyA | 3074588 | c.-117A>G | upstream_gene_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4249408 | c.2895G>A | synonymous_variant | 1.0 |
ethA | 4326116 | p.Thr453Ile | missense_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407717 | c.485dupT | frameshift_variant | 1.0 |