EBG00000313339 - n.1488C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
44 Sensitive
1 RR-TB
37 HR-TB
11 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1 | 10 |
| lineage4.1.2.1;lineage4.2.1 | 27 |
| lineage4.2.1 | 10 |
| lineage4.1.2;lineage4.2.1;lineage4.9 | 9 |
| lineage4.1.2.1;lineage4.2.1;lineage4.9 | 22 |
| lineage4.1.2.1;lineage4.2 | 6 |
| lineage4.1.2 | 1 |
| lineage4.1;lineage4.2.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage4.1.2.1;lineage4.9 | 1 |
| lineage4.2.1;lineage4.9 | 1 |
| lineage4.1.2.1;lineage4.2;lineage4.9 | 4 |
| lineage4.9 | 1 |
| lineage4.1.2;lineage4.2.1 | 1 |
| lineage4.9.1 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.1.2;lineage4.2;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 98 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR11662474 | MDR-TB | lineage2.1 | None | SRR1232988 | Sensitive | lineage4.1.2.1;lineage4.2.1 | None | ERR13276226 | Pre-XDR-TB | lineage4.2.1 | None | SRR1214359 | Sensitive | lineage4.1.2;lineage4.2.1;lineage4.9 | None | ERR270697 | HR-TB | lineage2.1 | None | SRR1214070 | Sensitive | lineage4.1.2;lineage4.2.1;lineage4.9 | None | SRR1226259 | HR-TB | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | SRR1231414 | Sensitive | lineage4.1.2.1;lineage4.2.1 | None | SRR1221313 | Sensitive | lineage4.1.2.1;lineage4.2.1 | None | SRR1223171 | HR-TB | lineage4.1.2.1;lineage4.2 | None | SRR14801698 | HR-TB | lineage4.2.1 | None | SRR1228489 | HR-TB | lineage4.1.2.1;lineage4.2.1 | None | SRR1221263 | Sensitive | lineage4.1.2.1;lineage4.2 | None | SRR1221238 | Sensitive | lineage4.1.2.1;lineage4.2.1 | None | SRR1215539 | HR-TB | lineage4.1.2.1;lineage4.2.1 | None | SRR1219259 | Sensitive | lineage4.1.2;lineage4.2.1;lineage4.9 | None | SAMN02585942 | Sensitive | lineage4.1.2 | None | SRR1215725 | HR-TB | lineage4.1.2.1;lineage4.2 | None | ERR11044238 | Pre-XDR-TB | lineage4.2.1 | None | SRR1220983 | Sensitive | lineage4.1;lineage4.2.1;lineage4.9 | None | SRR11662669 | MDR-TB | lineage2.1 | None | SRR1214735 | HR-TB | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | SRR1218737 | HR-TB | lineage4.1.2.1;lineage4.2 | None | ERR775787 | Sensitive | lineage2.1 | th | ERR1023421 | RR-TB | lineage4.4.1.1 | None | SRR1222234 | HR-TB | lineage4.1.2.1;lineage4.2.1 | None | SRR1223101 | HR-TB | lineage4.1.2.1;lineage4.2 | None | SRR1223327 | Sensitive | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | ERR144604 | HR-TB | lineage4.2.1 | ru | SRR1218217 | Sensitive | lineage4.1.2;lineage4.2.1;lineage4.9 | None | SRR1219131 | Sensitive | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | SRR1218485 | Sensitive | lineage4.1.2.1;lineage4.2.1 | None | SRR11662627 | MDR-TB | lineage2.1 | None | SRR1218484 | Sensitive | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | SRR1219270 | Sensitive | lineage4.1.2.1;lineage4.9 | None | SRR1232598 | Sensitive | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | SRR11662296 | MDR-TB | lineage2.1 | None | SRR1230902 | HR-TB | lineage4.1.2.1;lineage4.2.1 | None | SRR1220990 | Sensitive | lineage4.1.2.1;lineage4.2.1 | None | SRR1226239 | HR-TB | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | SRR1233653 | HR-TB | lineage4.1.2.1;lineage4.2.1 | None | SRR1214860 | Sensitive | lineage4.2.1;lineage4.9 | None | SRR1223039 | Sensitive | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | SRR1223380 | Sensitive | lineage4.1.2.1;lineage4.2.1 | None | ERR5865980 | MDR-TB | lineage4.2.1 | None | SRR6832382 | HR-TB | lineage4.2.1 | None | ERR5865816 | MDR-TB | lineage4.2.1 | None | SRR1221213 | HR-TB | lineage4.1.2.1;lineage4.2;lineage4.9 | None | SRR1221335 | HR-TB | lineage4.1.2.1;lineage4.2.1 | None | SRR1223082 | HR-TB | lineage4.1.2.1;lineage4.2.1 | None | ERR5865815 | MDR-TB | lineage4.2.1 | None | SRR1230595 | HR-TB | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | SRR1216250 | Sensitive | lineage4.1.2;lineage4.2.1;lineage4.9 | None | SRR1208577 | Other | lineage4.9 | None | SRR1214549 | Sensitive | lineage4.1.2.1;lineage4.2.1 | None | SRR1233283 | Sensitive | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | SRR11662162 | Pre-XDR-TB | lineage2.1 | None | SRR1218199 | HR-TB | lineage4.1.2.1;lineage4.2.1 | None | SRR11662223 | MDR-TB | lineage2.1 | None | SRR1222345 | Sensitive | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | SRR1221638 | Sensitive | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | SRR28240091 | MDR-TB | lineage4.2.1 | None | SRR1221524 | Sensitive | lineage4.1.2;lineage4.2.1;lineage4.9 | None | SRR1232411 | Sensitive | lineage4.1.2;lineage4.2.1 | None | SRR1228639 | Sensitive | lineage4.1.2;lineage4.2.1;lineage4.9 | None | SRR11662502 | MDR-TB | lineage2.1 | None | SRR1215907 | HR-TB | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | SRR1214598 | Sensitive | lineage4.1.2.1;lineage4.2.1 | None | SRR1221359 | HR-TB | lineage4.1.2.1;lineage4.2.1 | None | SRR1222231 | HR-TB | lineage4.1.2.1;lineage4.2.1 | None | SRR1218486 | HR-TB | lineage4.1.2.1;lineage4.2.1 | None | SRR1218964 | Sensitive | lineage4.1.2.1;lineage4.2.1 | None | SRR1218875 | HR-TB | lineage4.1.2.1;lineage4.2;lineage4.9 | None | SRR1231689 | Sensitive | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | SRR1214871 | Sensitive | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | ERR245810 | Sensitive | lineage4.9.1 | None | SRR11662677 | Pre-XDR-TB | lineage2.1 | None | SRR1231779 | Sensitive | lineage4.1.2;lineage4.2.1;lineage4.9 | None | SRR1232675 | Sensitive | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | SRR4037619 | Sensitive | lineage4.3.2.1 | None | SRR1220107 | HR-TB | lineage4.1.2.1;lineage4.2.1 | None | SRR1224855 | HR-TB | lineage4.1.2.1;lineage4.2;lineage4.9 | None | SRR1215865 | Sensitive | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | SRR1219178 | HR-TB | lineage4.1.2.1;lineage4.2.1 | None | SRR1222245 | HR-TB | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | SRR1222721 | HR-TB | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | SRR1215627 | HR-TB | lineage4.1.2.1;lineage4.2.1 | None | SRR1221272 | HR-TB | lineage4.1.2.1;lineage4.2.1 | None | SRR1222872 | HR-TB | lineage4.1.2.1;lineage4.2 | None | SRR1222355 | Sensitive | lineage4.1.2;lineage4.2.1;lineage4.9 | None | SRR1230845 | HR-TB | lineage4.1.2.1;lineage4.2.1 | None | SRR1214558 | Sensitive | lineage4.1.2;lineage4.2;lineage4.9 | None | SRR1220961 | HR-TB | lineage4.1.2.1;lineage4.2.1 | None | ERR2516744 | MDR-TB | lineage4.2.1 | gb | SRR1232603 | HR-TB | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | SRR1232807 | Sensitive | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | SRR1218222 | Sensitive | lineage4.1.2.1;lineage4.2.1;lineage4.9 | None | SRR1232755 | Sensitive | lineage4.1.2.1;lineage4.2;lineage4.9 | None |
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