Rv0001 - c.204C>T
Drug resistance types
0 Sensitive
0 RR-TB
16 HR-TB
38 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage4.9 | 1 |
| lineage4.3.3 | 27 |
| La3;M.canetti;lineage2.1;lineage4.9 | 3 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 3 |
| lineage2.1;lineage4.3.2 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage3.1 | 1 |
| M.canetti;lineage2.1 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 54 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | SRR9225003 | MDR-TB | lineage4.3.3 | None | SRR9224970 | MDR-TB | lineage4.3.3 | None | ERR126608 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR9224932 | MDR-TB | lineage4.3.3 | None | SRR29051305 | MDR-TB | lineage4.3.3 | None | SRR29050666 | MDR-TB | lineage4.3.3 | None | SRR29094398 | MDR-TB | lineage4.3.3 | None | SRR13583388 | MDR-TB | lineage4.3.3 | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR13583442 | MDR-TB | lineage4.3.3 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SRR13583387 | MDR-TB | lineage4.3.3 | None | SRR29050670 | MDR-TB | lineage4.3.3 | None | SRR9224945 | MDR-TB | lineage4.3.3 | None | SRR29051311 | MDR-TB | lineage4.3.3 | None | SRR29051340 | MDR-TB | lineage4.3.3 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR9224977 | MDR-TB | lineage4.3.3 | None | ERR124652 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR126600 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR29050731 | MDR-TB | lineage4.3.3 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR772255 | MDR-TB | lineage2.1;lineage4.3.2 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR9224973 | MDR-TB | lineage4.3.3 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR29051553 | MDR-TB | lineage4.3.3 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR29050740 | MDR-TB | lineage4.3.3 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR29050657 | MDR-TB | lineage4.3.3 | None | SRR9224946 | MDR-TB | lineage4.3.3 | None | ERR8976043 | HR-TB | lineage2.1;lineage2.2;lineage6.3 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6325442 | HR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR9224987 | MDR-TB | lineage4.3.3 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR29051589 | MDR-TB | lineage4.3.3 | None | SRR9224995 | MDR-TB | lineage4.3.3 | None | SRR29051363 | MDR-TB | lineage4.3.3 | None | SRR29051030 | MDR-TB | lineage4.3.3 | None | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | SRR29050699 | MDR-TB | lineage4.3.3 | None | SRR29050653 | MDR-TB | lineage4.3.3 | None | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None | ERR323041 | HR-TB | M.canetti;lineage2.1 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None |
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