Rv0001 - p.Arg400Ser
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
27 Sensitive
1 RR-TB
2 HR-TB
5 MDR-TB
84 Pre-XDR-TB
2 XDR-TB
5 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.1.1 | 2 |
| lineage4.3.4.1 | 5 |
| lineage2.2.1 | 98 |
| lineage4.8 | 2 |
| lineage4.1.2 | 1 |
| lineage4.2.2.1 | 1 |
| lineage3 | 4 |
| lineage2.2.1.1 | 1 |
| lineage6.3.1 | 1 |
| lineage4.4.2 | 1 |
| lineage4.3.2 | 1 |
| lineage1.1.2 | 1 |
| lineage4.3.3 | 3 |
| lineage4.3.4.2.1 | 1 |
| lineage4.2.2 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 126 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR16370298 | Other | lineage1.1.1 | None | SRR26112571 | Sensitive | lineage4.3.4.1 | None | ERR5863932 | Pre-XDR-TB | lineage2.2.1 | None | SRR29053588 | Other | lineage1.1.1 | None | SRR13312520 | Pre-XDR-TB | lineage2.2.1 | None | ERR2446338 | Sensitive | lineage4.3.4.1 | nl | SRR29539649 | Pre-XDR-TB | lineage2.2.1 | None | ERR3275309 | Sensitive | lineage4.3.4.1 | nl | SRR7516321 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863924 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864541 | Pre-XDR-TB | lineage2.2.1 | None | ERR11083127 | Sensitive | lineage4.8 | None | ERR5863938 | Pre-XDR-TB | lineage2.2.1 | None | SRR3544729 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782671 | Sensitive | lineage4.1.2 | None | ERR11082449 | Pre-XDR-TB | lineage2.2.1 | None | SRR16149133 | MDR-TB | lineage4.2.2.1 | None | ERR5863930 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863939 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863925 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863922 | Pre-XDR-TB | lineage2.2.1 | None | SRR3544743 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863926 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864534 | Pre-XDR-TB | lineage2.2.1 | None | ERR9119221 | Sensitive | lineage2.2.1 | None | ERR5864540 | Pre-XDR-TB | lineage2.2.1 | None | ERR11068832 | Sensitive | lineage3 | None | SRR21732089 | Sensitive | lineage2.2.1.1 | None | ERR5864530 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865296 | Pre-XDR-TB | lineage2.2.1 | None | ERR3170420 | Sensitive | lineage6.3.1 | gh | SRR13312519 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539082 | XDR-TB | lineage2.2.1 | None | DRR184664 | Sensitive | lineage4.4.2 | vn | ERR5863918 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865293 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762321 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863937 | Pre-XDR-TB | lineage2.2.1 | None | ERR6866421 | HR-TB | lineage4.3.2 | None | ERR11773806 | Pre-XDR-TB | lineage2.2.1 | None | ERR9121747 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865294 | Pre-XDR-TB | lineage2.2.1 | None | SRR28045079 | Sensitive | lineage1.1.2 | None | SRR29539020 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864536 | Pre-XDR-TB | lineage2.2.1 | None | SRR10397096 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863917 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539310 | Pre-XDR-TB | lineage2.2.1 | None | SRR7276669 | Sensitive | lineage4.3.3 | None | ERR5863921 | Pre-XDR-TB | lineage2.2.1 | None | SRR29385458 | XDR-TB | lineage2.2.1 | None | SRR7517736 | Pre-XDR-TB | lineage2.2.1 | None | SRR5266539 | Pre-XDR-TB | lineage2.2.1 | None | SRR26159046 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863934 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864531 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864539 | Pre-XDR-TB | lineage2.2.1 | None | SRR5266560 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762320 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863933 | Pre-XDR-TB | lineage2.2.1 | None | ERR4195619 | Pre-XDR-TB | lineage2.2.1 | None | SRR5152909 | Pre-XDR-TB | lineage2.2.1 | None | ERR12385620 | Sensitive | lineage4.3.4.1 | None | SRR13312544 | Pre-XDR-TB | lineage2.2.1 | None | SRR7276712 | Sensitive | lineage4.3.3 | None | ERR5863935 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864533 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863923 | Pre-XDR-TB | lineage2.2.1 | None | SRR6152753 | HR-TB | lineage2.2.1 | ca | ERR11773789 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830268 | Sensitive | lineage2.2.1 | vn | SRR13312517 | Pre-XDR-TB | lineage2.2.1 | None | SRR2100414 | Sensitive | lineage4.8 | None | ERR2513327 | Sensitive | lineage3 | gb | ERR5863929 | Pre-XDR-TB | lineage2.2.1 | None | SRR26159045 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863919 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865292 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866276 | Pre-XDR-TB | lineage2.2.1 | None | SRR13312545 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865295 | Pre-XDR-TB | lineage2.2.1 | None | ERR13388666 | Sensitive | lineage3 | None | ERR5863927 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972263 | RR-TB | lineage2.2.1 | None | ERR5866275 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864529 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088475 | Pre-XDR-TB | lineage2.2.1 | None | SRR26159060 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863916 | Pre-XDR-TB | lineage2.2.1 | None | ERR12307396 | Pre-XDR-TB | lineage2.2.1 | None | SRR15315889 | Other | lineage2.2.1 | None | SRR21277772 | Sensitive | lineage2.2.1 | None | ERR5864537 | Pre-XDR-TB | lineage2.2.1 | None | ERR11081405 | Pre-XDR-TB | lineage2.2.1 | None | ERR13265894 | Sensitive | lineage2.2.1 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR7517722 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539586 | MDR-TB | lineage2.2.1 | None | ERR5863936 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864532 | Pre-XDR-TB | lineage2.2.1 | None | ERR11050450 | Sensitive | lineage4.2.2 | None | SRR26399198 | Sensitive | lineage2.2.1 | None | SRR13312518 | Pre-XDR-TB | lineage2.2.1 | None | SRR27332355 | Sensitive | lineage3 | None | ERR4797464 | Sensitive | lineage4.3.3 | in | SRR11972211 | MDR-TB | lineage2.2.1 | None | SRR13312546 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863920 | Pre-XDR-TB | lineage2.2.1 | None | ERR760766 | MDR-TB | lineage4.1.2.1.1 | ar | ERR11773810 | Pre-XDR-TB | lineage2.2.1 | None | ERR5863928 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866277 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911385 | Pre-XDR-TB | lineage2.2.1 | us | ERR7911407 | Pre-XDR-TB | lineage2.2.1 | us | ERR11068114 | Sensitive | lineage4.6.2.2 | None | ERR5864535 | Pre-XDR-TB | lineage2.2.1 | None | ERR11083165 | Pre-XDR-TB | lineage2.2.1 | None | ERR2513040 | Sensitive | lineage4.2.1 | gb | SRR6257033 | Pre-XDR-TB | lineage2.2.1 | ru | SRR5065362 | Other | lineage2.2.1 | vn | ERR2517647 | Sensitive | lineage4.3.4.1 | nl | ERR5863931 | Pre-XDR-TB | lineage2.2.1 | None | SRR26159061 | MDR-TB | lineage2.2.1 | None | SRR5761429 | Pre-XDR-TB | lineage2.2.1 | None | ERR11798559 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864538 | Pre-XDR-TB | lineage2.2.1 | None |
|---|
