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SRA data
Rv0005
- c.1320C>T
Drug resistance types
2 Sensitive
1 RR-TB
5 HR-TB
2 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
0 Other
lineage Counts
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lineage
Count
lineage
Count
lineage4.2;lineage4.8.1;lineage4.9
2
lineage4.2;lineage4.9
2
lineage2.2.1
2
lineage1.1.2
1
La1.7.1;La1.7.X-unk4;lineage7
1
M.canetti;lineage4.2;lineage4.9
1
lineage4.4.1.1
1
M.canetti;lineage4.9
1
Showing 1 to 8 of 8 entries
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spoligotype Counts
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spoligotype
Count
spoligotype
Count
None
11
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Geographic prevalence
Country level data for this variant is available for 0 isolates.
+
−
Variant Proportion
Hover over a Country
0–0.1
0.1–0.2
0.2–0.3
0.3–0.4
0.4–0.5
0.5–0.6
0.6–0.8
0.8+
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Statisctical support
Not enough data to calculate support.
Samples
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ID
Drug resistance
Lineage
Country iso2
ID
Drug resistance
Lineage
Country iso2
ERR294266
HR-TB
lineage4.2;lineage4.8.1;lineage4.9
None
ERR3445501
HR-TB
La1.7.1;La1.7.X-unk4;lineage7
None
ERR736839
HR-TB
M.canetti;lineage4.9
None
SRR10040166
MDR-TB
lineage2.2.1
None
SRR27069466
Pre-XDR-TB
lineage2.2.1
None
SRR28858762
Sensitive
lineage1.1.2
None
SRR3675571
HR-TB
M.canetti;lineage4.2;lineage4.9
None
SRR6045785
MDR-TB
lineage4.2;lineage4.8.1;lineage4.9
None
SRR6046026
RR-TB
lineage4.2;lineage4.9
None
SRR6046295
HR-TB
lineage4.2;lineage4.9
None
Showing 1 to 10 of 11 entries
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