Rv0005 - p.Asp461His
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
0 HR-TB
0 MDR-TB
80 Pre-XDR-TB
8 XDR-TB
9 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.3 | 23 |
| lineage4.2.1 | 14 |
| lineage4.3.3 | 4 |
| lineage4.4.1.1 | 3 |
| lineage2.2.1 | 19 |
| lineage3.1.2.1 | 1 |
| lineage3 | 2 |
| lineage4.3.4.2 | 3 |
| lineage4.9 | 2 |
| lineage4.3.2 | 4 |
| lineage4.5 | 1 |
| lineage4.1.2.1 | 7 |
| lineage2.2.1;lineage4.2.1 | 1 |
| lineage4.8 | 5 |
| lineage2.2.2 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.6.4 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage2.2.1.1;lineage4.4.2 | 1 |
| lineage4.7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 97 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR1873391 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR28498452 | XDR-TB | lineage4.2.1 | None | ERR1873446 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR10869203 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093183 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR3273129 | Pre-XDR-TB | lineage4.3.3 | None | ERR1035002 | Pre-XDR-TB | lineage4.4.1.1 | za | ERR5866274 | Pre-XDR-TB | lineage2.2.1 | None | SRR29230979 | Other | lineage3.1.2.1 | None | ERR4796624 | Pre-XDR-TB | lineage3 | in | SRR29017693 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR13736075 | Other | lineage4.9 | None | ERR6052022 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR28706638 | XDR-TB | lineage2.2.1 | None | ERR7911596 | Pre-XDR-TB | lineage4.1.1.3 | za | DRR130217 | Pre-XDR-TB | lineage2.2.1 | None | ERR1873462 | Pre-XDR-TB | lineage4.1.1.3 | za | SRR16089630 | Other | lineage4.3.2 | None | SRR28498717 | Pre-XDR-TB | lineage4.2.1 | None | ERR4872318 | Pre-XDR-TB | lineage4.2.1 | None | SRR6807718 | Pre-XDR-TB | lineage4.2.1 | None | SRR24828592 | Pre-XDR-TB | lineage2.2.1 | None | ERR13288932 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9993219 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4553967 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR21887722 | Pre-XDR-TB | lineage2.2.1 | None | SRR28239754 | Pre-XDR-TB | lineage2.2.1 | None | SRR29772448 | Pre-XDR-TB | lineage3 | None | ERR4195255 | Other | lineage4.3.2 | None | ERR5864884 | Pre-XDR-TB | lineage4.3.3 | None | SRR8651642 | Pre-XDR-TB | lineage4.5 | cn | SRR7516424 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025573 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29096872 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR5153717 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR3014607 | Pre-XDR-TB | lineage4.1.2.1 | tn | SRR9738549 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR3743498 | Pre-XDR-TB | lineage4.2.1 | None | ERR9806944 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29093191 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29273670 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR15364434 | Pre-XDR-TB | lineage4.9 | None | ERR9992753 | XDR-TB | lineage4.1.1.3 | None | SRR28351634 | XDR-TB | lineage4.2.1 | None | SRR27069452 | Pre-XDR-TB | lineage2.2.1 | None | SRR28498697 | XDR-TB | lineage4.2.1 | None | SRR28498400 | Pre-XDR-TB | lineage4.2.1 | None | ERR502898 | Other | lineage2.2.1 | None | SRR14782507 | XDR-TB | lineage2.2.1;lineage4.2.1 | None | ERR275181 | Pre-XDR-TB | lineage4.8 | pt | ERR9806988 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13288801 | XDR-TB | lineage2.2.2 | None | SRR7516346 | Pre-XDR-TB | lineage2.2.1 | None | SRR10397212 | Pre-XDR-TB | lineage2.2.1 | None | SRR10380057 | Pre-XDR-TB | lineage4.2.1 | None | SRR29273981 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR29093245 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR6832498 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR29056305 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29094032 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR10397265 | Pre-XDR-TB | lineage2.2.1 | None | ERR13261138 | Pre-XDR-TB | lineage4.8 | None | SRR29055839 | Pre-XDR-TB | lineage4.1.1.3 | None | SRR29273938 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR4872299 | XDR-TB | lineage4.2.1 | None | ERR9806916 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13285813 | Pre-XDR-TB | lineage4.2.1 | None | SRR29772391 | Pre-XDR-TB | lineage4.8 | None | SRR16088570 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR29056327 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR8025664 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR5864885 | Pre-XDR-TB | lineage4.3.3 | None | SRR29055522 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR13291307 | Other | lineage4.3.2 | None | ERR1034815 | Pre-XDR-TB | lineage4.3.4.1 | pt | SRR29050687 | Other | lineage2.2.1 | None | SRR7516347 | Pre-XDR-TB | lineage2.2.1 | None | ERR9121220 | Other | lineage4.3.2 | None | ERR1035363 | Pre-XDR-TB | lineage4.6.4 | br | SRR3743202 | Pre-XDR-TB | lineage4.8 | None | SRR29017555 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR29093193 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4800004 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4828331 | Other | lineage2.2.1 | None | ERR5866330 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866329 | Pre-XDR-TB | lineage2.2.1 | None | ERR760896 | Pre-XDR-TB | lineage4.1.2.1.1 | ar | ERR10762431 | Pre-XDR-TB | lineage4.2.1 | None | ERR7911739 | Pre-XDR-TB | lineage4.3.3 | us | ERR1035191 | Pre-XDR-TB | lineage4.8 | pt | SRR24466750 | Pre-XDR-TB | lineage4.2.1 | None | SRR24673525 | Pre-XDR-TB | lineage2.2.1 | None | SRR21277139 | Pre-XDR-TB | lineage2.2.1.1;lineage4.4.2 | None | ERR5866331 | Pre-XDR-TB | lineage2.2.1 | None | SRR10380109 | Pre-XDR-TB | lineage4.2.1 | None | ERR2653098 | Pre-XDR-TB | lineage4.7 | None | SRR29096345 | Pre-XDR-TB | lineage4.1.1.3 | None |
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