Rv0006 - c.741C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
53 Sensitive
1 RR-TB
4 HR-TB
6 MDR-TB
0 Pre-XDR-TB
0 XDR-TB
11 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 22 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.5 | 29 |
| lineage4.2.2 | 2 |
| lineage2.2.1;lineage4.5 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 2 |
| lineage1.1.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage3;lineage4.5 | 1 |
| lineage2.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2.2.1 | 2 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage3 | 1 |
| lineage4.5;lineage4.8 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 75 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR11081726 | Sensitive | lineage4.8 | None | SRR3675550 | RR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR18714955 | Sensitive | lineage4.8 | None | ERR11080884 | Sensitive | lineage4.5 | None | ERR7764338 | Sensitive | lineage4.8 | None | SRR29440591 | Sensitive | lineage4.5 | None | ERR2179565 | Other | lineage4.2.2 | cn | SRR1724013 | Other | lineage4.2.2 | cn | ERR4827957 | Other | lineage2.2.1;lineage4.5 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR4827657 | Sensitive | lineage4.8 | None | SRR29681321 | HR-TB | lineage4.8 | None | ERR5311091 | Other | La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR7068877 | Sensitive | lineage4.5 | None | SRR21690847 | Sensitive | lineage4.8 | None | ERR4827504 | Sensitive | lineage4.5 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR28868853 | Other | lineage4.5 | None | ERR4827789 | Sensitive | lineage4.5 | None | SRR14801472 | Sensitive | lineage4.8 | None | ERR4797169 | Sensitive | lineage1.1.2 | in | ERR4827676 | Sensitive | lineage4.8 | None | SRR13180250 | Sensitive | lineage4.8 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR4830020 | Sensitive | lineage4.5 | None | ERR4830166 | Sensitive | lineage4.8 | None | ERR11043251 | Sensitive | lineage4.5 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR4830125 | Sensitive | lineage4.5 | None | ERR4830119 | Sensitive | lineage4.5 | None | ERR4830019 | Sensitive | lineage4.5 | None | ERR403411 | Sensitive | lineage3;lineage4.5 | None | SRR19325663 | Sensitive | lineage2.2.2 | None | SRR28045714 | Sensitive | lineage4.5 | None | ERR4829709 | HR-TB | lineage4.8 | it | ERR553301 | Sensitive | lineage4.5 | de | ERR553309 | Sensitive | lineage4.5 | de | SRR2100813 | Sensitive | lineage4.5 | None | ERR2600550 | Sensitive | lineage4.8 | None | ERR11067686 | Sensitive | lineage4.5 | None | SRR29441005 | Sensitive | lineage4.5 | None | SRR18213824 | Sensitive | lineage4.5 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | SRR14782704 | Sensitive | lineage4.8 | None | SRR13180423 | Sensitive | lineage4.8 | None | ERR13245810 | Sensitive | lineage2.2.1 | None | SRR13180313 | Sensitive | lineage4.8 | None | ERR11081602 | Sensitive | lineage4.8 | None | SRR13180432 | Sensitive | lineage4.8 | None | ERR4827554 | HR-TB | lineage4.5 | None | SRR6964646 | Sensitive | lineage4.5 | None | SRR28239748 | Sensitive | lineage4.8 | None | ERR11044820 | Sensitive | lineage4.8 | None | ERR13267590 | Sensitive | lineage4.5 | None | SRR19320525 | Sensitive | lineage4.8 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | SRR29053524 | Sensitive | lineage4.8 | None | DRR188493 | Sensitive | lineage2.2.1 | None | ERR266605 | Sensitive | lineage4.5 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR550696 | Sensitive | lineage4.5 | de | ERR234578 | Sensitive | lineage4.8 | ru | ERR2514686 | Sensitive | lineage4.5 | gb | ERR2514410 | Sensitive | lineage4.5 | gb | SRR7070491 | Sensitive | lineage4.5 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR4827682 | Sensitive | lineage4.5 | None | ERR11080885 | Sensitive | lineage4.5 | None | SRR21732061 | Sensitive | lineage3 | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR4827950 | Sensitive | lineage4.5 | None | ERR4830157 | HR-TB | lineage4.5;lineage4.8 | None |
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